Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30593.Seq
(698 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003136-1|AAK21379.3| 896|Caenorhabditis elegans Importin beta... 89 3e-18
Z83120-2|CAB05586.1| 883|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z47808-7|CAA87771.2| 934|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 29 4.2
U51997-1|AAG24067.1| 572|Caenorhabditis elegans Activated in bl... 29 4.2
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 29 4.2
EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of g... 29 4.2
AL117201-4|CAB55064.2| 266|Caenorhabditis elegans Hypothetical ... 29 4.2
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ... 29 4.2
AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein. 29 4.2
Z81455-6|CAN86597.1| 695|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z81455-5|CAJ90505.1| 611|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z81455-4|CAJ76928.1| 680|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z81455-2|CAD54123.1| 745|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z81455-1|CAB03807.2| 792|Caenorhabditis elegans Hypothetical pr... 28 5.6
AL032637-27|CAN86620.1| 695|Caenorhabditis elegans Hypothetical... 28 5.6
AL032637-26|CAJ90512.1| 611|Caenorhabditis elegans Hypothetical... 28 5.6
AL032637-25|CAJ76956.1| 680|Caenorhabditis elegans Hypothetical... 28 5.6
AL032637-24|CAD54171.1| 745|Caenorhabditis elegans Hypothetical... 28 5.6
AL032637-23|CAA21625.2| 792|Caenorhabditis elegans Hypothetical... 28 5.6
AL032637-1|CAD54169.1| 555|Caenorhabditis elegans Hypothetical ... 28 5.6
>AF003136-1|AAK21379.3| 896|Caenorhabditis elegans Importin beta
family protein 1 protein.
Length = 896
Score = 89.0 bits (211), Expect = 3e-18
Identities = 43/80 (53%), Positives = 54/80 (67%)
Frame = +3
Query: 270 RMAAGLQLKNHLTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIGTENSRPSSAAQCV 449
R AAGLQLKN L +K+ K Y QRWL L +VR +K+N+ +GTE SRPS AAQCV
Sbjct: 60 RQAAGLQLKNVLCAKETETKNVYLQRWLQLTAEVREQVKQNVTGTLGTEPSRPSIAAQCV 119
Query: 450 AYVAVAELPVGQWNDLIPIL 509
A +A AELP W ++I +L
Sbjct: 120 AAIACAELPQNLWPNVINLL 139
Score = 76.2 bits (179), Expect = 2e-14
Identities = 36/60 (60%), Positives = 44/60 (73%)
Frame = +2
Query: 515 NVVHVQSTELKKEATLEAIGYICQDIDAEVLTERSNQILTAIIHGMRSTEPSNHVRLAAT 694
NV QS E+ KE++LE +GYICQDID VL ++N +LTAIIHGMR E S +VR AAT
Sbjct: 142 NVTESQSGEMLKESSLETLGYICQDIDPRVLETKANDVLTAIIHGMRPEESSANVRFAAT 201
Score = 35.1 bits (77), Expect = 0.049
Identities = 15/42 (35%), Positives = 28/42 (66%)
Frame = +1
Query: 118 LIQILEKTVSPDRNELEAAVRYLDHAATTNFTTFIKMLSDVL 243
++ +LEKTVS ++N+ + A+ Y+ A +F F++ LS +L
Sbjct: 9 MLTVLEKTVSQNQNDQKQAMDYIAAACQQDFPVFVQCLSMIL 50
>Z83120-2|CAB05586.1| 883|Caenorhabditis elegans Hypothetical
protein R06A4.4a protein.
Length = 883
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/72 (22%), Positives = 31/72 (43%)
Frame = +3
Query: 324 LKQQYQQRWLALAEDVRLYIKENILAAIGTENSRPSSAAQCVAYVAVAELPVGQWNDLIP 503
LK + +W +DV+ +++ L +IG + + + V E + W DL+
Sbjct: 71 LKNNIRAKWNKYPQDVKFFVRTTCLKSIGDQEPLIRATVGIIVTTIVMEENMCDWPDLLD 130
Query: 504 IL*KMLFMSNLL 539
L +L + L
Sbjct: 131 TLATVLMQPDEL 142
>Z47808-7|CAA87771.2| 934|Caenorhabditis elegans Hypothetical
protein D2013.5 protein.
Length = 934
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +1
Query: 112 LTLIQI--LEKTVSPDRNELEAAVRYLDHAATTNFTTFIKMLSDVLLQGGTVKWLGWQ 279
L +IQ+ +E D+ +AA +L AA+ K L+D G KWL W+
Sbjct: 693 LRVIQLNAMEDRAVQDKRSWDAACNFLHKAASERLAAVKKQLTDDRGPGWASKWLMWK 750
>Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical
protein C02C6.1b protein.
Length = 838
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 288 QLKNHLTSKDPTLKQQYQQRWLALAEDVRLY 380
QL NH+ PTL+ Q++ A+ +DV Y
Sbjct: 286 QLTNHIRDTLPTLRDSLQKKMFAMEKDVAEY 316
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 288 QLKNHLTSKDPTLKQQYQQRWLALAEDVRLY 380
QL NH+ PTL+ Q++ A+ +DV Y
Sbjct: 286 QLTNHIRDTLPTLRDSLQKKMFAMEKDVAEY 316
>U51997-1|AAG24067.1| 572|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 2 protein.
Length = 572
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +2
Query: 68 NINLRIVKQCTQKQH*RLYKYLRRQFHLIEMNWKQQLDTSTMLPPQISQHSSKCCP 235
NINL QC+Q Q + +++Q+ + + N L+ +SQ +C P
Sbjct: 170 NINLEAPAQCSQCQQSCQQQCVQQQYSVQQCNQHCNLECQPTCQQAVSQCQQQCAP 225
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 288 QLKNHLTSKDPTLKQQYQQRWLALAEDVRLY 380
QL NH+ PTL+ Q++ A+ +DV Y
Sbjct: 286 QLTNHIRDTLPTLRDSLQKKMFAMEKDVAEY 316
>EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of
glp-1 protein.
Length = 1492
Score = 28.7 bits (61), Expect = 4.2
Identities = 23/85 (27%), Positives = 37/85 (43%)
Frame = -1
Query: 281 SCHPSHLTVPPWRRTSDNILMNVVKFVVAAWSRYLTAASNSFRSGETVFSSICISVNVVS 102
+CH + R T D I + F AA Y NSFR+ + + S+ + NV+S
Sbjct: 135 ACHAQY-AAEQTRDTQDCIKAAFMHFQYAA---YAFEQLNSFRNSDIFYPSVDLDANVIS 190
Query: 101 ACIVSLFLSLCCKRLTQSCFLKNRN 27
+ ++ + L Q L NR+
Sbjct: 191 -FYYKVMIAQAQECLVQKSLLDNRS 214
>AL117201-4|CAB55064.2| 266|Caenorhabditis elegans Hypothetical
protein Y53H1C.2b protein.
Length = 266
Score = 28.7 bits (61), Expect = 4.2
Identities = 23/85 (27%), Positives = 37/85 (43%)
Frame = -1
Query: 281 SCHPSHLTVPPWRRTSDNILMNVVKFVVAAWSRYLTAASNSFRSGETVFSSICISVNVVS 102
+CH + R T D I + F AA Y NSFR+ + + S+ + NV+S
Sbjct: 135 ACHAQY-AAEQTRDTQDCIKAAFMHFQYAA---YAFEQLNSFRNSDIFYPSVDLDANVIS 190
Query: 101 ACIVSLFLSLCCKRLTQSCFLKNRN 27
+ ++ + L Q L NR+
Sbjct: 191 -FYYKVMIAQAQECLVQKSLLDNRS 214
>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
protein Y53H1C.2a protein.
Length = 1512
Score = 28.7 bits (61), Expect = 4.2
Identities = 23/85 (27%), Positives = 37/85 (43%)
Frame = -1
Query: 281 SCHPSHLTVPPWRRTSDNILMNVVKFVVAAWSRYLTAASNSFRSGETVFSSICISVNVVS 102
+CH + R T D I + F AA Y NSFR+ + + S+ + NV+S
Sbjct: 135 ACHAQY-AAEQTRDTQDCIKAAFMHFQYAA---YAFEQLNSFRNSDIFYPSVDLDANVIS 190
Query: 101 ACIVSLFLSLCCKRLTQSCFLKNRN 27
+ ++ + L Q L NR+
Sbjct: 191 -FYYKVMIAQAQECLVQKSLLDNRS 214
>AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein.
Length = 838
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 288 QLKNHLTSKDPTLKQQYQQRWLALAEDVRLY 380
QL NH+ PTL+ Q++ A+ +DV Y
Sbjct: 286 QLTNHIRDTLPTLRDSLQKKMFAMEKDVAEY 316
>Z81455-6|CAN86597.1| 695|Caenorhabditis elegans Hypothetical
protein B0399.1f protein.
Length = 695
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -1
Query: 230 NILMNVVKFVVAAWSRYLTAASNSFRSGETVFSSICISVNVVSACIVSLFLSLCC 66
++ + V+ ++ LTA S+S +G T S I I + SAC+VS F +CC
Sbjct: 183 SLFLAVLGLLLVIIDSELTALSSS--TGITKDSPISIILR--SACVVSTFFLICC 233
>Z81455-5|CAJ90505.1| 611|Caenorhabditis elegans Hypothetical
protein B0399.1e protein.
Length = 611
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -1
Query: 230 NILMNVVKFVVAAWSRYLTAASNSFRSGETVFSSICISVNVVSACIVSLFLSLCC 66
++ + V+ ++ LTA S+S +G T S I I + SAC+VS F +CC
Sbjct: 99 SLFLAVLGLLLVIIDSELTALSSS--TGITKDSPISIILR--SACVVSTFFLICC 149
>Z81455-4|CAJ76928.1| 680|Caenorhabditis elegans Hypothetical
protein B0399.1d protein.
Length = 680
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -1
Query: 230 NILMNVVKFVVAAWSRYLTAASNSFRSGETVFSSICISVNVVSACIVSLFLSLCC 66
++ + V+ ++ LTA S+S +G T S I I + SAC+VS F +CC
Sbjct: 168 SLFLAVLGLLLVIIDSELTALSSS--TGITKDSPISIILR--SACVVSTFFLICC 218
>Z81455-2|CAD54123.1| 745|Caenorhabditis elegans Hypothetical
protein B0399.1b protein.
Length = 745
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -1
Query: 230 NILMNVVKFVVAAWSRYLTAASNSFRSGETVFSSICISVNVVSACIVSLFLSLCC 66
++ + V+ ++ LTA S+S +G T S I I + SAC+VS F +CC
Sbjct: 233 SLFLAVLGLLLVIIDSELTALSSS--TGITKDSPISIILR--SACVVSTFFLICC 283
>Z81455-1|CAB03807.2| 792|Caenorhabditis elegans Hypothetical
protein B0399.1a protein.
Length = 792
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -1
Query: 230 NILMNVVKFVVAAWSRYLTAASNSFRSGETVFSSICISVNVVSACIVSLFLSLCC 66
++ + V+ ++ LTA S+S +G T S I I + SAC+VS F +CC
Sbjct: 280 SLFLAVLGLLLVIIDSELTALSSS--TGITKDSPISIILR--SACVVSTFFLICC 330
>AL032637-27|CAN86620.1| 695|Caenorhabditis elegans Hypothetical
protein B0399.1f protein.
Length = 695
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -1
Query: 230 NILMNVVKFVVAAWSRYLTAASNSFRSGETVFSSICISVNVVSACIVSLFLSLCC 66
++ + V+ ++ LTA S+S +G T S I I + SAC+VS F +CC
Sbjct: 183 SLFLAVLGLLLVIIDSELTALSSS--TGITKDSPISIILR--SACVVSTFFLICC 233
>AL032637-26|CAJ90512.1| 611|Caenorhabditis elegans Hypothetical
protein B0399.1e protein.
Length = 611
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -1
Query: 230 NILMNVVKFVVAAWSRYLTAASNSFRSGETVFSSICISVNVVSACIVSLFLSLCC 66
++ + V+ ++ LTA S+S +G T S I I + SAC+VS F +CC
Sbjct: 99 SLFLAVLGLLLVIIDSELTALSSS--TGITKDSPISIILR--SACVVSTFFLICC 149
>AL032637-25|CAJ76956.1| 680|Caenorhabditis elegans Hypothetical
protein B0399.1d protein.
Length = 680
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -1
Query: 230 NILMNVVKFVVAAWSRYLTAASNSFRSGETVFSSICISVNVVSACIVSLFLSLCC 66
++ + V+ ++ LTA S+S +G T S I I + SAC+VS F +CC
Sbjct: 168 SLFLAVLGLLLVIIDSELTALSSS--TGITKDSPISIILR--SACVVSTFFLICC 218
>AL032637-24|CAD54171.1| 745|Caenorhabditis elegans Hypothetical
protein B0399.1b protein.
Length = 745
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -1
Query: 230 NILMNVVKFVVAAWSRYLTAASNSFRSGETVFSSICISVNVVSACIVSLFLSLCC 66
++ + V+ ++ LTA S+S +G T S I I + SAC+VS F +CC
Sbjct: 233 SLFLAVLGLLLVIIDSELTALSSS--TGITKDSPISIILR--SACVVSTFFLICC 283
>AL032637-23|CAA21625.2| 792|Caenorhabditis elegans Hypothetical
protein B0399.1a protein.
Length = 792
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -1
Query: 230 NILMNVVKFVVAAWSRYLTAASNSFRSGETVFSSICISVNVVSACIVSLFLSLCC 66
++ + V+ ++ LTA S+S +G T S I I + SAC+VS F +CC
Sbjct: 280 SLFLAVLGLLLVIIDSELTALSSS--TGITKDSPISIILR--SACVVSTFFLICC 330
>AL032637-1|CAD54169.1| 555|Caenorhabditis elegans Hypothetical
protein B0399.1c protein.
Length = 555
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -1
Query: 230 NILMNVVKFVVAAWSRYLTAASNSFRSGETVFSSICISVNVVSACIVSLFLSLCC 66
++ + V+ ++ LTA S+S +G T S I I + SAC+VS F +CC
Sbjct: 43 SLFLAVLGLLLVIIDSELTALSSS--TGITKDSPISIILR--SACVVSTFFLICC 93
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,459,646
Number of Sequences: 27780
Number of extensions: 313979
Number of successful extensions: 970
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -