Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30592.Seq
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   1.3  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              23   4.0  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   9.3  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 505 VLNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYG 612
           VL   Q +A K A  +   N   II+EPT     YG
Sbjct: 348 VLRHVQAEAEKHAAMLYQYNFNIIISEPTERISPYG 383


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 638 EMYLSLXLGGGTSTCPSLPSRM 703
           ++Y +  L GGT+  P +  RM
Sbjct: 67  DLYANTVLSGGTTMYPGIADRM 88


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
          finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 66 PFCIFNQSCYLFLKQ 22
          P+C  N SCY  LK+
Sbjct: 9  PYCRRNFSCYYSLKR 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,711
Number of Sequences: 438
Number of extensions: 5417
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)