Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30591.Seq
         (847 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)              127   1e-29
SB_17117| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.89 
SB_32486| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_46957| Best HMM Match : fn3 (HMM E-Value=3.8)                       30   2.7  
SB_3285| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.7  
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_43794| Best HMM Match : zf-B_box (HMM E-Value=6)                    29   4.7  
SB_14976| Best HMM Match : rve (HMM E-Value=1.3e-38)                   29   6.3  
SB_5572| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.3  

>SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)
          Length = 268

 Score =  127 bits (306), Expect = 1e-29
 Identities = 56/100 (56%), Positives = 71/100 (71%)
 Frame = +3

Query: 486 SFTGQSKSTHWVRDHRVHHKYSDTDADPHNASRGFFYSHIGWLFVRKHPEVKKKGKLIDL 665
           S   Q+    W RDHRVHHKYS+TDADPHNA RGFF+SH+GWL  RKHP+V +KGK IDL
Sbjct: 48  SMAAQNDIFEWSRDHRVHHKYSETDADPHNAKRGFFFSHVGWLMQRKHPDVIRKGKGIDL 107

Query: 666 SDLFDNPALMFQHRYSKTFIPIVCFGLPTILSIILWDELL 785
           SDL+ +  +MFQ R+ K    ++C  +PT++   LW E L
Sbjct: 108 SDLYADSVVMFQRRHYKKISMLMCVLIPTLVP-SLWGESL 146



 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 18/34 (52%), Positives = 29/34 (85%)
 Frame = +1

Query: 403 GVTAGAHRLWSHKSYKARLPLQILLMVFLSLANQ 504
           GVT GAHRLW+H+++KA+ PL++++M+  S+A Q
Sbjct: 19  GVTIGAHRLWAHRTFKAKWPLRLVIMLMNSMAAQ 52


>SB_17117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +3

Query: 687 ALMFQHRYSKT---FIPIVCFGLPTILSIILWDELLVSRLGTHHHEIRYHF 830
           ++ F +RY  +   FI IVC     +L +IL   + VS L  HHH   +H+
Sbjct: 83  SMSFTYRYCVSMSLFIAIVC----RVLQVILVTRISVSTLIMHHHHYHHHY 129


>SB_32486| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 914

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
 Frame = +3

Query: 306 TRYNVLWPISLLYDSEVAFSWIRVPVLCSSNDWRYSWSSQTVVP--QIIQSKITSSNPTN 479
           + Y  L PIS + D +V  S      +  + D R   S  T +P   I+  K+T+ N   
Sbjct: 659 SHYTTL-PISGILDPKVRESHYTTLPISGNLDTRVGESHYTALPISGILDPKLTAPNTGL 717

Query: 480 GLSFTGQSKSTHWVRDHR 533
             S T  S++  + RDHR
Sbjct: 718 TYSTTKNSRNEIYFRDHR 735


>SB_46957| Best HMM Match : fn3 (HMM E-Value=3.8)
          Length = 123

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 306 TRYNVLWP-ISLLYDSEVAFSWIRVPVLCSSNDWRYSWSSQTVV 434
           + Y V W  + ++ DSE    W  +PV+ S +++   W++ TV+
Sbjct: 18  SEYTVQWTTLPVMSDSEYTVQWTTLPVM-SDSEYTVQWTTLTVM 60



 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 306 TRYNVLWP-ISLLYDSEVAFSWIRVPVLCSSNDWRYSWSSQTVV 434
           + Y V W  + ++ DSE    W  +PV+ S +++   W++ TV+
Sbjct: 63  SEYTVQWTTLPVMSDSEYTVQWTTLPVM-SDSEYTVQWTTLTVM 105



 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 306 TRYNVLWP-ISLLYDSEVAFSWIRVPVLCSSNDWRYSWSSQTVV 434
           + Y V W  ++++ DSE    W  +PV+ S +++   W++  V+
Sbjct: 48  SEYTVQWTTLTVMSDSEYTVQWTTLPVM-SDSEYTVQWTTLPVM 90


>SB_3285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1437

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 306 TRYNVLWP-ISLLYDSEVAFSWIRVPVLCSSNDWRYSWSSQTVV 434
           + YNV W  + ++ DSE    W  +PV+ S +++   W++  V+
Sbjct: 571 SEYNVQWTTLPVMSDSEYTVQWTTLPVM-SDSEYTLQWTTLPVM 613



 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 306 TRYNVLWP-ISLLYDSEVAFSWIRVPVLCSSNDWRYSWSSQTVV 434
           + Y V W  + ++ DSE    W  +PV+ S +++   W++ TV+
Sbjct: 661 SEYTVQWTTLPVMSDSEYTVQWTTLPVM-SDSEYTVQWTTLTVM 703


>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3051

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 538  WTLWSRTQWVLFDWPVKERPLVGFEEVILLCMICGTTVCELQL 410
            W+LWSR+ W    WP    P   +   + L ++CG  +C L L
Sbjct: 1648 WSLWSRSMWPRSLWPRSLWPRSLWRWSLCL-VLCGLGLCCLGL 1689


>SB_43794| Best HMM Match : zf-B_box (HMM E-Value=6)
          Length = 320

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 13/93 (13%)
 Frame = +3

Query: 330 ISLLYDSEVAFSWIRV-----PVLCSSNDWRYSWSSQTVVPQIIQSKIT--------SSN 470
           + LL +   ++SW  V      +  +    R +W+  TV+    Q   T         S 
Sbjct: 187 LQLLMEKAASYSWSSVRNFHFSISSALEAGRLTWNDATVIRDRAQIAFTHADLRSASQSA 246

Query: 471 PTNGLSFTGQSKSTHWVRDHRVHHKYSDTDADP 569
           P NG+S+  ++K   + +D     K+S    DP
Sbjct: 247 PRNGISYAAKAKKELYCKDWNHTGKFSCPSTDP 279


>SB_14976| Best HMM Match : rve (HMM E-Value=1.3e-38)
          Length = 1172

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = -2

Query: 372  ESN*RPLRCRTTKI*AIKHCNV*INMYEYIFIDDFIFSRSTTEGLTLSCSRLE 214
            +SN    RC  T +  I+  N+  N ++   +DDF+F   TT   T  CS  E
Sbjct: 1032 QSNGEVERCNRTILKVIRIANLQGNDWKKA-LDDFLFQYRTTNHATTGCSPAE 1083


>SB_5572| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +1

Query: 460 PLQILLMVFLSLANQRAPIGFETIESITSTAIRTQIHITQAVASFILI*VGCSSENTLKL 639
           PL+++L   LS  N   P+G   I    + AI   I I  A+A  I I +  ++  T+ +
Sbjct: 58  PLRVILKPLLSDYNDYNPVGGVAIAIAIAIAIAIAIAIAIAIAIAIAIAIAIANSITISI 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,524,677
Number of Sequences: 59808
Number of extensions: 608518
Number of successful extensions: 1428
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1425
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)