Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30589.Seq
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical pr...   118   4e-27
Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical pr...   106   1e-23
Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical p...   106   1e-23
Z69904-3|CAA93780.1|  372|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AF125450-3|AAD12817.1|  309|Caenorhabditis elegans Hypothetical ...    29   4.6  
Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical pr...    28   8.1  
AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1 ...    28   8.1  

>Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical
           protein C06A1.1 protein.
          Length = 809

 Score =  118 bits (284), Expect = 4e-27
 Identities = 48/95 (50%), Positives = 70/95 (73%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
           + +G+  + +  I++SD++CP+EK+RM             DVVSI P P++ YG R+H+L
Sbjct: 64  ILKGKKRKESVAIIVSDESCPNEKVRMNRVVRNNLRIRLGDVVSITPAPNLSYGTRIHVL 123

Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTF 507
           PIDD++EGLTGNLF+V+LKPYF+EAYRP+H+ D F
Sbjct: 124 PIDDTIEGLTGNLFDVFLKPYFLEAYRPLHKGDIF 158



 Score =   99 bits (238), Expect = 2e-21
 Identities = 42/60 (70%), Positives = 53/60 (88%)
 Frame = +3

Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQL 689
           V+  MR VEFKVVET+P+P CIV+PDT+IH +G+PIKREEEEE++N +GYDD+GG RKQL
Sbjct: 160 VQAAMRTVEFKVVETEPAPACIVSPDTMIHYEGDPIKREEEEESMNDIGYDDLGGVRKQL 219



 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 42/63 (66%), Positives = 55/63 (87%)
 Frame = +2

Query: 71  KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 250
           K  D+LSTAIL+ K +PNRLIV+++  DDNSV+A+SQAKM++L LFRGD V+LKGK+RKE
Sbjct: 13  KKNDELSTAILKDKVKPNRLIVDQSEQDDNSVIAVSQAKMDELGLFRGDAVILKGKKRKE 72

Query: 251 TVA 259
           +VA
Sbjct: 73  SVA 75


>Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score =  106 bits (255), Expect = 1e-23
 Identities = 48/60 (80%), Positives = 53/60 (88%)
 Frame = +3

Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQL 689
           V+  MR VEFKVVETDP+P CIVAPDTVIH +G+PIKREEEEEALN VGYDD+GG RKQL
Sbjct: 159 VQAAMRTVEFKVVETDPAPACIVAPDTVIHYEGDPIKREEEEEALNEVGYDDLGGVRKQL 218



 Score =  105 bits (253), Expect = 3e-23
 Identities = 47/95 (49%), Positives = 67/95 (70%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
           + +G+  +    IVL+ DNCP++KI+M             DVVSI+    ++YGKRVH+L
Sbjct: 64  ILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVL 122

Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTF 507
           PIDD++EGLTGNLF+V+L+PYF +AYRP+H+ D F
Sbjct: 123 PIDDTIEGLTGNLFDVFLRPYFTDAYRPVHKGDIF 157



 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 40/63 (63%), Positives = 56/63 (88%)
 Frame = +2

Query: 71  KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 250
           K  D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+R+E
Sbjct: 13  KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72

Query: 251 TVA 259
           TV+
Sbjct: 73  TVS 75


>Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score =  106 bits (255), Expect = 1e-23
 Identities = 48/60 (80%), Positives = 53/60 (88%)
 Frame = +3

Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQL 689
           V+  MR VEFKVVETDP+P CIVAPDTVIH +G+PIKREEEEEALN VGYDD+GG RKQL
Sbjct: 159 VQAAMRTVEFKVVETDPAPACIVAPDTVIHYEGDPIKREEEEEALNEVGYDDLGGVRKQL 218



 Score =  105 bits (253), Expect = 3e-23
 Identities = 47/95 (49%), Positives = 67/95 (70%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
           + +G+  +    IVL+ DNCP++KI+M             DVVSI+    ++YGKRVH+L
Sbjct: 64  ILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVL 122

Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTF 507
           PIDD++EGLTGNLF+V+L+PYF +AYRP+H+ D F
Sbjct: 123 PIDDTIEGLTGNLFDVFLRPYFTDAYRPVHKGDIF 157



 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 40/63 (63%), Positives = 56/63 (88%)
 Frame = +2

Query: 71  KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 250
           K  D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+R+E
Sbjct: 13  KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72

Query: 251 TVA 259
           TV+
Sbjct: 73  TVS 75


>Z69904-3|CAA93780.1|  372|Caenorhabditis elegans Hypothetical
           protein ZK20.3 protein.
          Length = 372

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +3

Query: 552 TDPSPFCIVAPDTVIHCDGEPIKREEEEE--ALNAVGYD 662
           ++P+P   VAP+     + E +  E+EE   A+  +GYD
Sbjct: 153 SNPAPAADVAPEAAAPAEAEALTDEQEENVLAITGMGYD 191


>AF125450-3|AAD12817.1|  309|Caenorhabditis elegans Hypothetical
          protein Y39F10A.3 protein.
          Length = 309

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 85 IIRAFIICHFIQNLLLESKNYYNFY 11
          ++ AF++C  + N+LL SK+ Y FY
Sbjct: 8  LLLAFVVCLTLFNVLLWSKSNYGFY 32


>Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical
           protein F42E11.4 protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 50  LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQL 199
           L K+  NK+ +DL T  LR++    +++ E  V+  N       AK+E +
Sbjct: 61  LRKLLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAI 110


>AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1
           protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 50  LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQL 199
           L K+  NK+ +DL T  LR++    +++ E  V+  N       AK+E +
Sbjct: 61  LRKLLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAI 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,669,304
Number of Sequences: 27780
Number of extensions: 371449
Number of successful extensions: 1004
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)