Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30588.Seq
(877 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 55 2e-08
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 28 1.5
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 28 2.0
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 28 2.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.5
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 27 4.6
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces... 26 6.1
SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|ch... 26 6.1
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 6.1
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz... 26 8.1
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces... 26 8.1
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 54.8 bits (126), Expect = 2e-08
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 4/140 (2%)
Frame = +2
Query: 371 FAYLCYVAATIGVTAGAHRLWSHKSYKARLPLQILLMVFLSLANQRPPIGFETIESITST 550
FA + Y + +G+TAG HRLWSH++YKA+ PL+ L + A + +
Sbjct: 93 FAIIYYAYSGLGITAGYHRLWSHRAYKAKKPLEYFLAAGGAAAFEGSIRWWSRDHRAHHR 152
Query: 551 AIRT-QIHITQAVGFFYSHIGWLFVRXTP*S*EERKTNRPFGFVR*SCINVFSTGIRKHF 727
T + GF+Y+H+GW+ + P R+ R V + F +HF
Sbjct: 153 YTDTDKDPYNVKKGFWYAHVGWMIILQNP-----RRIGR--SDVSDLNSDPFVMFNHRHF 205
Query: 728 IPI---VCFGLPTILPVILW 778
+PI + F P++ +LW
Sbjct: 206 LPIASFMAFIFPSLFCGLLW 225
Score = 46.0 bits (104), Expect = 7e-06
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +1
Query: 517 WVRDHRVHHKYSDTDADPHNASRG 588
W RDHR HH+Y+DTD DP+N +G
Sbjct: 143 WSRDHRAHHRYTDTDKDPYNVKKG 166
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1115
Score = 28.3 bits (60), Expect = 1.5
Identities = 27/113 (23%), Positives = 46/113 (40%)
Frame = +3
Query: 537 PSQVQRYGRRST*RKPWASFILI*VGCSSEXHPEVKKKGKLIDLSDLFDNPALMFSAQVF 716
P +++ + R PW + LI G + + H E +K D+ + SA F
Sbjct: 406 PQEIKSFHRNQIIEVPWLNRKLISEGATPKFHSERQK--------DIMSGNDIEGSASYF 457
Query: 717 ENISSLLSALDSQQYFQ*YYGMELLSSRLGTSPSWRYG*SNFPRYSSLSGPVS 875
E I +S DS F Y + S+ G + +G N +Y+ L ++
Sbjct: 458 EEIEDTISGPDSIPKF--YQRPVIKYSKFGIE-DFDFGFYNKTKYAGLETDIT 507
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 27.9 bits (59), Expect = 2.0
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = +2
Query: 377 YLCYVAATIGVTAGAHRLWSHKSYKARLPLQILLMVFLSLANQRPPIGFETIESITSTAI 556
+LCY + + + + ++L ++ +VFLSL N P I F + S S A+
Sbjct: 582 FLCYDILVETILPAGSQTLTDSVFSSKLYKLVIFVVFLSLVNSGPFI-FRAL-SKKSLAV 639
Query: 557 RTQIHIT 577
T + IT
Sbjct: 640 LTMLWIT 646
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 482 VFLSLANQRPPIGFETIESITSTAIRTQIHITQAVGFFYSHIGWLFV 622
+F+ L + PP+ F + SI TA+ ++ +FY IG F+
Sbjct: 346 LFIRLKMKYPPLNFPCVFSIICTAV--SANMGPMYPYFYPRIGLFFI 390
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 3.5
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 370 IRVPVLCSSNDWRYSWSSQTVVPQIIQSKITSSNPTNGLSFTGQSKTT 513
I P SS+ + SW+S T + SK+TSS + L+ T ++ TT
Sbjct: 604 ITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSST-SIPLTSTNRTSTT 650
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 26.6 bits (56), Expect = 4.6
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +1
Query: 310 VTMFYGLYLCCTTAKWPFSWIRVPVLCSSNDWRYSWSSQTVVPQIIQSKITSSNPTNG 483
V YG+ T+ +PFS + VPV N +R + S + + + I SSN ++G
Sbjct: 500 VNTLYGVGSSYTSESFPFSKLTVPV--ERNSFRETESPKPFLSRQIGISTLSSNISSG 555
>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 564
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = +1
Query: 724 FHPYCLL-WTPNNTSSNIM 777
FHPYCL+ W + +N+M
Sbjct: 168 FHPYCLIDWDITDNETNVM 186
>SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 150
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 265 YEIVYKNIFIHIYLHVTMFYGLYLC 339
YE+ YK IFI L+ ++ LY+C
Sbjct: 66 YEVPYKWIFIIEMLYYELYLTLYVC 90
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 427 TVVPQIIQSKITSSNPTNGLSFTGQSKTTHWVRD 528
TVV + +++ T SN T+ L S T +WV D
Sbjct: 312 TVVYERLRASHTQSNSTSALPEEDASVTENWVHD 345
>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
Utp5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 666
Score = 25.8 bits (54), Expect = 8.1
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 415 WSSQT-VVPQIIQSKITSSNPTNGLSFTGQSKTTHWVRDHRVHHKYSDTDA 564
W T V + + +I SS TNGL +SKT ++ V + Y +++A
Sbjct: 352 WKESTRTVFETVPWRILSSQATNGLIELVRSKTRLTSKNKTVSNVYDESNA 402
>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 711
Score = 25.8 bits (54), Expect = 8.1
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 487 SFTGQSKTTHWVRDHRVHHKYS 552
SF Q+++ W+ D R+H KY+
Sbjct: 16 SFEEQTESVSWIIDLRLHSKYA 37
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,010,632
Number of Sequences: 5004
Number of extensions: 89554
Number of successful extensions: 264
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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