Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30588.Seq
         (877 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)               64   1e-10
SB_7094| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.1  
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_34390| Best HMM Match : PMT (HMM E-Value=4.5)                       28   8.6  

>SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)
          Length = 268

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 1/126 (0%)
 Frame = +2

Query: 404 GVTAGAHRLWSHKSYKARLPLQILLMVFLSLANQRPPIGFETIESITSTAIRTQIHITQA 583
           GVT GAHRLW+H+++KA+ PL++++M+  S+A Q     +     +      T      A
Sbjct: 19  GVTIGAHRLWAHRTFKAKWPLRLVIMLMNSMAAQNDIFEWSRDHRVHHKYSETDADPHNA 78

Query: 584 V-GFFYSHIGWLFVRXTP*S*EERKTNRPFGFVR*SCINVFSTGIRKHFIPIVCFGLPTI 760
             GFF+SH+GWL  R  P    + K       +    + +F     K    ++C  +PT+
Sbjct: 79  KRGFFFSHVGWLMQRKHPDVIRKGK-GIDLSDLYADSVVMFQRRHYKKISMLMCVLIPTL 137

Query: 761 LPVILW 778
           +P  LW
Sbjct: 138 VP-SLW 142



 Score = 58.4 bits (135), Expect = 7e-09
 Identities = 25/40 (62%), Positives = 28/40 (70%)
 Frame = +1

Query: 487 SFTGQSKTTHWVRDHRVHHKYSDTDADPHNASRGLLLFSY 606
           S   Q+    W RDHRVHHKYS+TDADPHNA RG   FS+
Sbjct: 48  SMAAQNDIFEWSRDHRVHHKYSETDADPHNAKRG-FFFSH 86


>SB_7094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 732 GMKCFRIPVLKTLMQDYRTNPKGLLVFLSS 643
           G + FR  V  TL  DY   P+ +L+FL +
Sbjct: 186 GYRLFRCRVFSTLPSDYMLTPRAMLIFLDA 215


>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3051

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 539  WTLWSRTQWVVFDWPVKERPLVGFEEVILLCMICGTTVCELQL 411
            W+LWSR+ W    WP    P   +   + L ++CG  +C L L
Sbjct: 1648 WSLWSRSMWPRSLWPRSLWPRSLWRWSLCL-VLCGLGLCCLGL 1689


>SB_34390| Best HMM Match : PMT (HMM E-Value=4.5)
          Length = 537

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -1

Query: 682 SNKSERSISFPFFLTSGCXSDEQPTYMRIKEAHGLRYV--DLRPYRCTCDGLYGL 524
           S+K+ R +    F+TSG    +QP++  ++E HG  ++    +P   T  GL+G+
Sbjct: 177 SSKTMRELHGAVFITSG----QQPSFKTMRELHGAVFITSGQQPSFKTMRGLHGV 227


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,382,822
Number of Sequences: 59808
Number of extensions: 646339
Number of successful extensions: 1483
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1481
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2490695009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)