Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30588.Seq
(877 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g06350.1 68414.m00671 fatty acid desaturase family protein si... 44 2e-04
At1g06080.1 68414.m00637 delta 9 desaturase (ADS1) identical to ... 40 0.003
At3g15870.1 68416.m02007 fatty acid desaturase family protein si... 39 0.005
At1g06120.1 68414.m00641 fatty acid desaturase family protein si... 39 0.005
At1g06090.1 68414.m00638 fatty acid desaturase family protein si... 39 0.005
At3g15850.1 68416.m02005 fatty acid desaturase family protein si... 38 0.007
At1g06360.1 68414.m00672 fatty acid desaturase family protein si... 38 0.009
At2g31360.1 68415.m03831 delta 9 desaturase (ADS2) identical to ... 38 0.012
At1g06100.1 68414.m00639 fatty acid desaturase family protein si... 37 0.015
At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to R... 31 0.76
At1g61270.1 68414.m06905 lysine and histidine specific transport... 29 5.4
At5g52920.1 68418.m06567 pyruvate kinase, putative similar to py... 28 7.1
At3g27530.1 68416.m03441 vesicle tethering family protein contai... 28 7.1
At5g01890.1 68418.m00108 leucine-rich repeat transmembrane prote... 28 9.4
>At1g06350.1 68414.m00671 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 300
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = +1
Query: 490 FTGQSKTTHWVRDHRVHHKYSDTDADPHNASRGLLLFSYRLVVRQXNTLKLR 645
F Q WV HR HH+++D+D DPH+ G LLFS+ L + +K +
Sbjct: 102 FALQGDPMDWVSIHRFHHQFTDSDRDPHSPKEG-LLFSHILWIFDTQYIKYK 152
Score = 29.1 bits (62), Expect = 4.1
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Frame = +2
Query: 371 FAYLCYVAATIGVTAGAHRLWSHKSYKARLPLQILLMVFLSLANQRPPIGFETIESI--T 544
F + + T+ +T HR SH+S+K L+ A Q P+ + +I
Sbjct: 61 FGLVLFALTTLSITFSFHRNLSHRSFKIPKWLEYPWAYSAVFALQGDPMDWVSIHRFHHQ 120
Query: 545 STAIRTQIHITQAVGFFYSHIGWLF 619
T H + G +SHI W+F
Sbjct: 121 FTDSDRDPH-SPKEGLLFSHILWIF 144
>At1g06080.1 68414.m00637 delta 9 desaturase (ADS1) identical to
delta 9 acyl-lipid desaturase (ADS1) GB:BAA25180
GI:2970034 from [Arabidopsis thaliana]
Length = 305
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 499 QSKTTHWVRDHRVHHKYSDTDADPHNASRGLLLFSYRL 612
Q WV HR HH+++D+D DPH+ + G FS+ L
Sbjct: 110 QGDPIDWVSTHRYHHQFTDSDRDPHSPNEG-FWFSHLL 146
Score = 36.3 bits (80), Expect = 0.027
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Frame = +2
Query: 359 PSVGFAYLCYVAATIGVTAGAHRLWSHKSYKARLPLQILLMVFLSLANQRPPIGFETIES 538
P++ A + Y +G+T HR +H+S+K L+ LA Q PI + +
Sbjct: 62 PALRVALIVYTVGGLGITVSYHRNLAHRSFKVPKWLEYFFAYCGLLAIQGDPIDWVSTHR 121
Query: 539 I--TSTAIRTQIHITQAVGFFYSHIGWLF 619
T H + GF++SH+ WLF
Sbjct: 122 YHHQFTDSDRDPH-SPNEGFWFSHLLWLF 149
>At3g15870.1 68416.m02007 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 292
Score = 38.7 bits (86), Expect = 0.005
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 499 QSKTTHWVRDHRVHHKYSDTDADPHNASRG 588
Q WV +HR HHK+ +T DPH+ ++G
Sbjct: 98 QGDPIEWVSNHRYHHKHCETQRDPHSPTQG 127
Score = 31.5 bits (68), Expect = 0.76
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +2
Query: 371 FAYLCYVAATIGVTAGAHRLWSHKSYKARLPLQILLMVFLSLANQRPPIGFETIESITST 550
F +L ++ I +T HR SH+S+ L+ L LA Q PI + +
Sbjct: 55 FPWLVFING-ICITLSYHRNLSHRSFDLPKWLEYLFAYGGVLAFQGDPIEWVSNHRYHHK 113
Query: 551 AIRTQIHI-TQAVGFFYSHIGWLF 619
TQ + GF++SH+ W+F
Sbjct: 114 HCETQRDPHSPTQGFWFSHMAWIF 137
>At1g06120.1 68414.m00641 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase GB:BAA25180
GI:2970034 (ADS1) from [Arabidopsis thaliana]; supported
by cDNA:gi_12083275_gb_AF332434.1_AF332434
Length = 299
Score = 38.7 bits (86), Expect = 0.005
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 490 FTGQSKTTHWVRDHRVHHKYSDTDADPHNASRG 588
F Q WV HR HH+++D+D DPH+ G
Sbjct: 101 FALQGHPIDWVSTHRFHHQFTDSDRDPHSPIEG 133
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +2
Query: 371 FAYLCYVAATIGVTAGAHRLWSHKSYKARLPLQILLMVFLSLANQRPPIGFETIESITST 550
FA + ++ + +T HR +H+S+K L+ A Q PI + +
Sbjct: 60 FAAMVGISTNLSITFSYHRNLTHRSFKLPKWLEYPFAYSALFALQGHPIDWVSTHRFHHQ 119
Query: 551 AIRTQIHITQAV-GFFYSHIGWLF 619
+ + GF++SH+ W+F
Sbjct: 120 FTDSDRDPHSPIEGFWFSHVFWIF 143
>At1g06090.1 68414.m00638 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase GB:BAA25180
GI:2970034 (ADS1) from [Arabidopsis thaliana]
Length = 299
Score = 38.7 bits (86), Expect = 0.005
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 490 FTGQSKTTHWVRDHRVHHKYSDTDADPHNASRG 588
F Q WV HR HH+++D+D DPH+ G
Sbjct: 101 FALQGHPIDWVSTHRFHHQFTDSDRDPHSPIEG 133
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Frame = +2
Query: 371 FAYLCYVAATIGVTAGAHRLWSHKSYKARLPLQILLMVFLSLANQRPPIGFETIESITST 550
F + + ++ +T HR +HKS+K L+ A Q PI + +
Sbjct: 60 FGVILAIVTSLSITFSYHRNLTHKSFKLPKWLEYPFAYSALFALQGHPIDWVSTHRFHHQ 119
Query: 551 AIRTQIHITQAV-GFFYSHIGWLF 619
+ + GF++SH+ W+F
Sbjct: 120 FTDSDRDPHSPIEGFWFSHVFWIF 143
>At3g15850.1 68416.m02005 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 371
Score = 38.3 bits (85), Expect = 0.007
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +1
Query: 499 QSKTTHWVRDHRVHHKYSDTDADPHNASRGLLLFSYRLVVRQXNTLKLR 645
Q WV HR HH++ D+D DPH+ G FS+ + NT+ R
Sbjct: 175 QGNPIDWVSTHRYHHQFCDSDRDPHSPLDG-FWFSHMNWMFDTNTITQR 222
Score = 33.9 bits (74), Expect = 0.14
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Frame = +2
Query: 362 SVGFAYLCYVAATIGVTAGAHRLWSHKSYKARLPLQILLMVFLSLANQRPPIGFETIESI 541
SV F L V +G+T HR SHK++K L+ L + A Q PI + +
Sbjct: 129 SVAFG-LYIVTGLLGITLSFHRNLSHKAFKLPKWLEYLFAYCGAQALQGNPIDWVSTHRY 187
Query: 542 TSTAIRTQIHITQAV-GFFYSHIGWLF 619
+ + GF++SH+ W+F
Sbjct: 188 HHQFCDSDRDPHSPLDGFWFSHMNWMF 214
>At1g06360.1 68414.m00672 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 299
Score = 37.9 bits (84), Expect = 0.009
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 490 FTGQSKTTHWVRDHRVHHKYSDTDADPHNASRG 588
F Q WV HR HH+++D+D DPH+ G
Sbjct: 101 FALQGDPLDWVSIHRFHHQFTDSDRDPHSPIEG 133
Score = 36.7 bits (81), Expect = 0.020
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +2
Query: 371 FAYLCYVAATIGVTAGAHRLWSHKSYKARLPLQILLMVFLSLANQRPPIGFETIESITST 550
F ++ Y ++ +T HR +H+S+K L+ L F A Q P+ + +I
Sbjct: 60 FGFVLYALTSLSITFSYHRNLAHRSFKLPKWLEYPLAYFAVFALQGDPLDWVSIHRFHHQ 119
Query: 551 AIRTQIHITQAV-GFFYSHIGWL 616
+ + GF++SH+ W+
Sbjct: 120 FTDSDRDPHSPIEGFWFSHVWWI 142
>At2g31360.1 68415.m03831 delta 9 desaturase (ADS2) identical to
delta 9 acyl-lipid desaturase (ADS2) GI:2970036 from
[Arabidopsis thaliana]
Length = 307
Score = 37.5 bits (83), Expect = 0.012
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = +2
Query: 377 YLCYVAATIGVTAGAHRLWSHKSYKARLPLQILLMVFLSLANQRPPIGFETIESI--TST 550
+L Y +G+T HR +H+S+K L+ LL LA Q PI + + T
Sbjct: 70 FLFYTIGGLGITVSYHRNLAHRSFKVPKWLEYLLAYCALLAIQGDPIDWVSTHRYHHQFT 129
Query: 551 AIRTQIHITQAVGFFYSHIGWLF 619
H + GF++SH+ W++
Sbjct: 130 DSERDPH-SPKEGFWFSHLLWIY 151
Score = 37.5 bits (83), Expect = 0.012
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 499 QSKTTHWVRDHRVHHKYSDTDADPHNASRGLLLFSYRL 612
Q WV HR HH+++D++ DPH+ G FS+ L
Sbjct: 112 QGDPIDWVSTHRYHHQFTDSERDPHSPKEG-FWFSHLL 148
>At1g06100.1 68414.m00639 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 299
Score = 37.1 bits (82), Expect = 0.015
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 499 QSKTTHWVRDHRVHHKYSDTDADPHNASRG 588
Q WV HR HH+++D+D DPH+ G
Sbjct: 104 QGDPLDWVSIHRFHHQFTDSDRDPHSPIEG 133
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +2
Query: 371 FAYLCYVAATIGVTAGAHRLWSHKSYKARLPLQILLMVFLSLANQRPPIGFETIESITST 550
F + + + +T HR +H+S+K L+ LA Q P+ + +I
Sbjct: 60 FGIILAILTNLCITFSYHRNLTHRSFKLPKWLEYPFAYSALLALQGDPLDWVSIHRFHHQ 119
Query: 551 AIRTQIHITQAV-GFFYSHIGWLF 619
+ + GF++SH+ W+F
Sbjct: 120 FTDSDRDPHSPIEGFWFSHVLWIF 143
>At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to RNA
helicase SDE3 [Arabidopsis thaliana] GI:13811296
Length = 1002
Score = 31.5 bits (68), Expect = 0.76
Identities = 16/57 (28%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +3
Query: 654 KLIDL-SDLFDNPALMFSAQVFENISSLLSALDSQQYFQ*YYGMELLSSRLGTSPSW 821
+++DL S LF + L+ S + +++ + L+ L ++++ +YG++ R G +PSW
Sbjct: 626 EILDLPSKLFYDGELVASKEDTDSVLASLNFLPNKEFPMVFYGIQGCDEREGNNPSW 682
>At1g61270.1 68414.m06905 lysine and histidine specific transporter,
putative similar to lysine and histidine specific
transporter GI:2576361 from [Arabidopsis thaliana];
contains Pfam profile PF01490: Transmembrane amino acid
transporter protein
Length = 451
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 579 CVMWICVRIAVLVMDSMVSNPMGGL 505
C+ WIC+ + VLV M+ P+GGL
Sbjct: 413 CINWICIILGVLV---MIIAPIGGL 434
>At5g52920.1 68418.m06567 pyruvate kinase, putative similar to
pyruvate kinase isozyme G, chloroplast precursor
[Nicotiana tabacum] SWISS-PROT:Q40546
Length = 579
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -3
Query: 497 PVKERPLVGFEEVILLCMICGTTVCELQL*RQSLLLHNTGTRIQL 363
P++E P++ EE+I LC G V +S+++H T TR ++
Sbjct: 357 PIEEVPILQ-EEIINLCRSMGKAVIVATNMLESMIVHPTPTRAEV 400
>At3g27530.1 68416.m03441 vesicle tethering family protein contains
Pfam PF04869: Uso1 / p115 like vesicle tethering
protein, head region and PF04871: Uso1 / p115 like
vesicle tethering protein, C terminal region
Length = 914
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +3
Query: 717 ENISSLLSALDSQQYFQ*YYGMELLSSRLGTS 812
ENI+ LLS L+ + ++ YY +++L++ L S
Sbjct: 125 ENITLLLSLLEEEDFYVRYYTLQILTALLMNS 156
>At5g01890.1 68418.m00108 leucine-rich repeat transmembrane protein
kinase, putative leucine-rich receptor-like protein
(LRPKm1) - Malus domestica, EMBL:AF053127
Length = 967
Score = 27.9 bits (59), Expect = 9.4
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = +1
Query: 379 PVLCSSNDWRYSWSSQTVVPQIIQSKITSSNPTNGLSFTGQ 501
P LC S R S +V P+ I SSNPTNG + TGQ
Sbjct: 563 PSLCGSVVNR---SCLSVHPKPIVLNPNSSNPTNGPALTGQ 600
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,651,603
Number of Sequences: 28952
Number of extensions: 458999
Number of successful extensions: 1178
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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