Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30586.Seq
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 113 1e-25
11_01_0155 - 1287003-1287452 113 1e-25
07_03_0227 - 15398371-15398925 30 0.90
03_06_0097 - 31632238-31632525,31633386-31633769 30 0.90
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539... 29 2.1
11_06_0598 - 25391923-25393197 28 4.8
04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986... 28 4.8
01_05_0500 + 22752190-22752329,22752957-22753032,22753292-227533... 27 6.3
05_03_0424 - 13795721-13795900,13796134-13796202,13796260-137963... 27 8.4
>12_01_0152 - 1168928-1169377
Length = 149
Score = 113 bits (271), Expect = 1e-25
Identities = 50/60 (83%), Positives = 57/60 (95%)
Frame = +3
Query: 255 AISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 434
AI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVADPRRCEPKKFGG GARAR+QKSYR
Sbjct: 90 AIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149
Score = 102 bits (244), Expect = 2e-22
Identities = 44/83 (53%), Positives = 61/83 (73%)
Frame = +1
Query: 7 REPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 186
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 187 SMVXIRVTVKGGGHVAQVYAIRQ 255
+ +R+ V+GGG +Q+YAIRQ
Sbjct: 67 KDIDMRIRVRGGGKTSQIYAIRQ 89
>11_01_0155 - 1287003-1287452
Length = 149
Score = 113 bits (271), Expect = 1e-25
Identities = 50/60 (83%), Positives = 57/60 (95%)
Frame = +3
Query: 255 AISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 434
AI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVADPRRCEPKKFGG GARAR+QKSYR
Sbjct: 90 AIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149
Score = 102 bits (244), Expect = 2e-22
Identities = 44/83 (53%), Positives = 61/83 (73%)
Frame = +1
Query: 7 REPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 186
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 187 SMVXIRVTVKGGGHVAQVYAIRQ 255
+ +R+ V+GGG +Q+YAIRQ
Sbjct: 67 KDIDMRIRVRGGGKTSQIYAIRQ 89
>07_03_0227 - 15398371-15398925
Length = 184
Score = 30.3 bits (65), Expect = 0.90
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -1
Query: 157 VPEVCTAAVWAQPSPMGARLHAAFH--DHACNTQLRWRF 47
+P +C A W P+ A H FH C+ + RW +
Sbjct: 23 LPPLCRAPWWPSPASSAAATHLRFHPRHRRCHPRRRWSY 61
>03_06_0097 - 31632238-31632525,31633386-31633769
Length = 223
Score = 30.3 bits (65), Expect = 0.90
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = +1
Query: 19 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLV---EPRLLQYKLQEPILLLGKEKFS 189
Q + GR+KTA A + G G + +N R P ++Y + P++ LG E +
Sbjct: 96 QRITATGRRKTAIARVVLQEGTGRVFINFRDAKEYLQGNPMWMEY-CKVPLVTLGFE--N 152
Query: 190 MVXIRVTVKGGGHVAQVYAI 249
+ V V GGG Q AI
Sbjct: 153 SYDVFVKVHGGGLSGQAQAI 172
>07_03_1553 -
27653473-27653490,27653634-27653673,27653852-27653939,
27654150-27654230,27654644-27655084,27655692-27656325
Length = 433
Score = 29.1 bits (62), Expect = 2.1
Identities = 21/72 (29%), Positives = 32/72 (44%)
Frame = +1
Query: 37 GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVXIRVTVK 216
G++K + A + + G G VN + D P +L ++ + + TVK
Sbjct: 295 GKRKCSIARVWIQPGDGKFIVNDKQFDSYFP-ILDHRADLLRPFTVTKTLGRWDVTCTVK 353
Query: 217 GGGHVAQVYAIR 252
GGG QV AIR
Sbjct: 354 GGGVSGQVGAIR 365
>11_06_0598 - 25391923-25393197
Length = 424
Score = 27.9 bits (59), Expect = 4.8
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = -1
Query: 415 LARAPGPPNFLGSQRRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIRAF 263
LA PP L S TS L + T + ++ S+TY AIR F
Sbjct: 254 LATLVSPPKLLQSLNISGITSGLPDWITELDQLTKITLSNTYLGEDAIRVF 304
>04_04_1154 -
31297628-31298020,31298150-31298300,31298389-31298620,
31298700-31298910,31299137-31299255,31299341-31299415,
31299991-31300189,31300258-31300664,31300775-31300839,
31300967-31301011,31301449-31301520,31301597-31301671,
31301912-31301983,31302178-31302249,31302525-31302596,
31302880-31302951,31303056-31303127,31304064-31304135,
31304375-31304561,31304686-31304815
Length = 930
Score = 27.9 bits (59), Expect = 4.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 100 NGRPLDLVEPRLLQYKLQEPILLL 171
NG PLD V+P+L ++ +E I ++
Sbjct: 807 NGHPLDFVDPKLSEFNSEEVIRVI 830
>01_05_0500 +
22752190-22752329,22752957-22753032,22753292-22753351,
22754718-22754882,22756299-22756358
Length = 166
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 111 WAPVYTQHSMTTLAIRNCGGGFLTSEYLD 25
W V T H +T +A R+C G F ++LD
Sbjct: 18 WNYVVTAHKLTVVA-RSCVGNFTAPDHLD 45
>05_03_0424 -
13795721-13795900,13796134-13796202,13796260-13796385,
13797224-13798166,13798263-13799248
Length = 767
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +3
Query: 222 WSCSTSLRYQTAISKALIAFYQKYVDEASKKEIKDILVQYD 344
WS S + + + AL+ Y+K + A + + D ++ D
Sbjct: 279 WSWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKD 319
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,084,770
Number of Sequences: 37544
Number of extensions: 308601
Number of successful extensions: 819
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -