Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30582.Seq
(458 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X69181-1|CAA48925.1| 121|Homo sapiens ribosomal protein L31 pro... 103 3e-22
X15940-1|CAA34066.1| 125|Homo sapiens protein ( Human mRNA for ... 103 3e-22
BC070373-1|AAH70373.1| 125|Homo sapiens ribosomal protein L31 p... 103 3e-22
BC070210-1|AAH70210.1| 121|Homo sapiens RPL31 protein protein. 103 3e-22
BC017343-1|AAH17343.1| 125|Homo sapiens ribosomal protein L31 p... 103 3e-22
AC016738-2|AAY14823.1| 125|Homo sapiens unknown protein. 103 3e-22
AB061830-1|BAB79468.1| 125|Homo sapiens ribosomal protein L31 p... 103 3e-22
AB007180-1|BAA25839.1| 47|Homo sapiens ribosomal protein L31 p... 54 2e-07
>X69181-1|CAA48925.1| 121|Homo sapiens ribosomal protein L31
protein.
Length = 121
Score = 103 bits (247), Expect = 3e-22
Identities = 44/60 (73%), Positives = 54/60 (90%)
Frame = +1
Query: 73 KKRQISHKRIVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNK 252
KK + + +VTREYT+N+HKR+HGVGFKKRAPRA+KEIRKFA K+MGTPD+R+DTRLNK
Sbjct: 7 KKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNK 66
Score = 68.9 bits (161), Expect = 8e-12
Identities = 30/56 (53%), Positives = 39/56 (69%)
Frame = +3
Query: 243 LKQILWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVD 410
L + +W+KG+RNVP+ N+DEDS +KL+TLVTYVPV + K LQT NVD
Sbjct: 64 LNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 119
>X15940-1|CAA34066.1| 125|Homo sapiens protein ( Human mRNA for
ribosomal protein L31. ).
Length = 125
Score = 103 bits (247), Expect = 3e-22
Identities = 44/60 (73%), Positives = 54/60 (90%)
Frame = +1
Query: 73 KKRQISHKRIVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNK 252
KK + + +VTREYT+N+HKR+HGVGFKKRAPRA+KEIRKFA K+MGTPD+R+DTRLNK
Sbjct: 11 KKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNK 70
Score = 68.9 bits (161), Expect = 8e-12
Identities = 30/56 (53%), Positives = 39/56 (69%)
Frame = +3
Query: 243 LKQILWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVD 410
L + +W+KG+RNVP+ N+DEDS +KL+TLVTYVPV + K LQT NVD
Sbjct: 68 LNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 123
>BC070373-1|AAH70373.1| 125|Homo sapiens ribosomal protein L31
protein.
Length = 125
Score = 103 bits (247), Expect = 3e-22
Identities = 44/60 (73%), Positives = 54/60 (90%)
Frame = +1
Query: 73 KKRQISHKRIVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNK 252
KK + + +VTREYT+N+HKR+HGVGFKKRAPRA+KEIRKFA K+MGTPD+R+DTRLNK
Sbjct: 11 KKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNK 70
Score = 68.9 bits (161), Expect = 8e-12
Identities = 30/56 (53%), Positives = 39/56 (69%)
Frame = +3
Query: 243 LKQILWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVD 410
L + +W+KG+RNVP+ N+DEDS +KL+TLVTYVPV + K LQT NVD
Sbjct: 68 LNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 123
>BC070210-1|AAH70210.1| 121|Homo sapiens RPL31 protein protein.
Length = 121
Score = 103 bits (247), Expect = 3e-22
Identities = 44/60 (73%), Positives = 54/60 (90%)
Frame = +1
Query: 73 KKRQISHKRIVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNK 252
KK + + +VTREYT+N+HKR+HGVGFKKRAPRA+KEIRKFA K+MGTPD+R+DTRLNK
Sbjct: 11 KKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNK 70
Score = 57.6 bits (133), Expect = 2e-08
Identities = 24/48 (50%), Positives = 33/48 (68%)
Frame = +3
Query: 243 LKQILWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIK 386
L + +W+KG+RNVP+ N+DEDS +KL+TLVTYVPV + K
Sbjct: 68 LNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFK 115
>BC017343-1|AAH17343.1| 125|Homo sapiens ribosomal protein L31
protein.
Length = 125
Score = 103 bits (247), Expect = 3e-22
Identities = 44/60 (73%), Positives = 54/60 (90%)
Frame = +1
Query: 73 KKRQISHKRIVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNK 252
KK + + +VTREYT+N+HKR+HGVGFKKRAPRA+KEIRKFA K+MGTPD+R+DTRLNK
Sbjct: 11 KKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNK 70
Score = 68.9 bits (161), Expect = 8e-12
Identities = 30/56 (53%), Positives = 39/56 (69%)
Frame = +3
Query: 243 LKQILWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVD 410
L + +W+KG+RNVP+ N+DEDS +KL+TLVTYVPV + K LQT NVD
Sbjct: 68 LNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 123
>AC016738-2|AAY14823.1| 125|Homo sapiens unknown protein.
Length = 125
Score = 103 bits (247), Expect = 3e-22
Identities = 44/60 (73%), Positives = 54/60 (90%)
Frame = +1
Query: 73 KKRQISHKRIVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNK 252
KK + + +VTREYT+N+HKR+HGVGFKKRAPRA+KEIRKFA K+MGTPD+R+DTRLNK
Sbjct: 11 KKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNK 70
Score = 68.9 bits (161), Expect = 8e-12
Identities = 30/56 (53%), Positives = 39/56 (69%)
Frame = +3
Query: 243 LKQILWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVD 410
L + +W+KG+RNVP+ N+DEDS +KL+TLVTYVPV + K LQT NVD
Sbjct: 68 LNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 123
>AB061830-1|BAB79468.1| 125|Homo sapiens ribosomal protein L31
protein.
Length = 125
Score = 103 bits (247), Expect = 3e-22
Identities = 44/60 (73%), Positives = 54/60 (90%)
Frame = +1
Query: 73 KKRQISHKRIVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNK 252
KK + + +VTREYT+N+HKR+HGVGFKKRAPRA+KEIRKFA K+MGTPD+R+DTRLNK
Sbjct: 11 KKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNK 70
Score = 68.9 bits (161), Expect = 8e-12
Identities = 30/56 (53%), Positives = 39/56 (69%)
Frame = +3
Query: 243 LKQILWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVD 410
L + +W+KG+RNVP+ N+DEDS +KL+TLVTYVPV + K LQT NVD
Sbjct: 68 LNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 123
>AB007180-1|BAA25839.1| 47|Homo sapiens ribosomal protein L31
protein.
Length = 47
Score = 54.4 bits (125), Expect = 2e-07
Identities = 25/45 (55%), Positives = 30/45 (66%)
Frame = +3
Query: 276 NVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVD 410
NVP+ N+DEDS +KL+TLVTYVPV + K LQT NVD
Sbjct: 1 NVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 45
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,051,241
Number of Sequences: 237096
Number of extensions: 1025093
Number of successful extensions: 2755
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2755
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3872123864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -