Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30582.Seq
         (458 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82077-3|CAB63331.1|  122|Caenorhabditis elegans Hypothetical pr...    84   5e-17
Z82077-4|CAB63332.1|   70|Caenorhabditis elegans Hypothetical pr...    64   5e-11
U41542-8|AAN39682.1|  437|Caenorhabditis elegans Protein disulfi...    27   6.6  
U41542-6|AAK39152.1|  493|Caenorhabditis elegans Protein disulfi...    27   6.6  
Z96047-6|CAB09416.1|  922|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AF024614-1|AAB97161.1|  922|Caenorhabditis elegans ADAM 10 protein.    27   8.7  

>Z82077-3|CAB63331.1|  122|Caenorhabditis elegans Hypothetical
           protein W09C5.6a protein.
          Length = 122

 Score = 83.8 bits (198), Expect = 5e-17
 Identities = 37/61 (60%), Positives = 49/61 (80%)
 Frame = +1

Query: 73  KKRQISHKRIVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNK 252
           KK + +   +VTREYT+++H R+ G+G KKRAPRAI EI+KFA+ QM T D+RVDT+LNK
Sbjct: 7   KKSRSTINEVVTREYTIHIHARIRGIGSKKRAPRAIDEIKKFAKIQMKTNDVRVDTKLNK 66

Query: 253 F 255
           F
Sbjct: 67  F 67



 Score = 64.1 bits (149), Expect = 5e-11
 Identities = 27/59 (45%), Positives = 37/59 (62%)
 Frame = +3

Query: 243 LKQILWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVDASQ 419
           L + +WSKG++NVP+          N+DEDSA KL+TL TYVP  +  GL   NVD+ +
Sbjct: 64  LNKFIWSKGIKNVPYRVRVRLSRRRNEDEDSAQKLYTLCTYVPCTNFHGLTNVNVDSEE 122


>Z82077-4|CAB63332.1|   70|Caenorhabditis elegans Hypothetical
           protein W09C5.6b protein.
          Length = 70

 Score = 64.1 bits (149), Expect = 5e-11
 Identities = 27/59 (45%), Positives = 37/59 (62%)
 Frame = +3

Query: 243 LKQILWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVDASQ 419
           L + +WSKG++NVP+          N+DEDSA KL+TL TYVP  +  GL   NVD+ +
Sbjct: 12  LNKFIWSKGIKNVPYRVRVRLSRRRNEDEDSAQKLYTLCTYVPCTNFHGLTNVNVDSEE 70



 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +1

Query: 211 MGTPDIRVDTRLNKF 255
           M T D+RVDT+LNKF
Sbjct: 1   MKTNDVRVDTKLNKF 15


>U41542-8|AAN39682.1|  437|Caenorhabditis elegans Protein disulfide
           isomerase protein2, isoform b protein.
          Length = 437

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +1

Query: 223 DIRVDTRLNKFFGLRESEMFPSVSV*GFHEDVMMMK 330
           D+  + R+ +FFGL++ E+ P++ +    ED+   K
Sbjct: 234 DVEENARIMEFFGLKKDEL-PAIRLISLEEDMTKFK 268


>U41542-6|AAK39152.1|  493|Caenorhabditis elegans Protein disulfide
           isomerase protein2, isoform a protein.
          Length = 493

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +1

Query: 223 DIRVDTRLNKFFGLRESEMFPSVSV*GFHEDVMMMK 330
           D+  + R+ +FFGL++ E+ P++ +    ED+   K
Sbjct: 290 DVEENARIMEFFGLKKDEL-PAIRLISLEEDMTKFK 324


>Z96047-6|CAB09416.1|  922|Caenorhabditis elegans Hypothetical
           protein DY3.7 protein.
          Length = 922

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = +1

Query: 82  QISHKRIVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAE 204
           +I+H++   +    NL +++ G GF  R  R + +++   E
Sbjct: 171 EINHRKWRVKRDAENLSEQMQGCGFSSRVRREMTDVQNSGE 211


>AF024614-1|AAB97161.1|  922|Caenorhabditis elegans ADAM 10 protein.
          Length = 922

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = +1

Query: 82  QISHKRIVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAE 204
           +I+H++   +    NL +++ G GF  R  R + +++   E
Sbjct: 171 EINHRKWRVKRDAENLSEQMQGCGFSSRVRREMTDVQNSGE 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,527,931
Number of Sequences: 27780
Number of extensions: 182317
Number of successful extensions: 412
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)