Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30581.Seq
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   151   8e-38
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   150   1e-37
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo...    26   4.0  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    25   5.3  
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    25   7.0  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    25   9.2  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  151 bits (365), Expect = 8e-38
 Identities = 78/156 (50%), Positives = 95/156 (60%)
 Frame = +2

Query: 41  MKLNVSYPATGMPEVVRSGGRAQASYLLRKAHXXXXXXXXXXXXMEGLCTSCRWRQRQAR 220
           MKLN+SYPA G  +++      +    + K                G          +  
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 221 IPDETGRPDKQRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 400
            P   G     RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL IV++G Q+
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQD 120

Query: 401 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRY 508
           IPGLTD  VP+RLGPKRASKIR+ FNLSKEDDVR++
Sbjct: 121 IPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQF 156


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  150 bits (364), Expect = 1e-37
 Identities = 77/156 (49%), Positives = 95/156 (60%)
 Frame = +2

Query: 41  MKLNVSYPATGMPEVVRSGGRAQASYLLRKAHXXXXXXXXXXXXMEGLCTSCRWRQRQAR 220
           MKLN+SYPA G  +++      +    + K                G          +  
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 221 IPDETGRPDKQRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 400
            P   G     RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL I+++G Q+
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQD 120

Query: 401 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRY 508
           IPGLTD  VP+RLGPKRASKIR+ FNLSKEDDVR++
Sbjct: 121 IPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQF 156


>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +1

Query: 28  IDRSHEVKRFVPGNGHARSCS-KWWTSTSFVSFTKS 132
           ID S        G+GHARS S  WW     V F K+
Sbjct: 94  IDNSLLAPPLSNGSGHARSRSHAWWLPYIVVEFDKN 129


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 496 IIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGTLAHNNKSQD 362
           +I + K E +   GSTFG   +G       R++   L H+N  QD
Sbjct: 98  VIIWHKEEAIPGLGSTFG---SGEKHTENWRSYRRLLGHDNDIQD 139


>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 227 DETGRPDKQRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVD 349
           +E    D     ++ SK +S  +P+  G  KRK+ R  +VD
Sbjct: 85  EEEEEEDATPEPVVTSKKNSRSKPKNGGASKRKASRRTVVD 125


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = -1

Query: 237  PVSSGILACRCRQRHEVHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTS 79
            P+SS I        H  H+P  +   D+    R C F++ +E   + P +  S
Sbjct: 970  PISSNIPILSVAPFHAHHAPQGYIYVDENSFIRICKFQEDFEYDNKWPYKKVS 1022


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,281,836
Number of Sequences: 5004
Number of extensions: 46821
Number of successful extensions: 105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)