Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30581.Seq
(528 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 124 3e-29
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 123 1e-28
09_04_0727 + 19765175-19765384,19765523-19765595,19766476-197665... 29 3.1
08_02_0911 + 22530370-22530497,22531083-22531126,22531224-225312... 28 5.3
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 27 7.1
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201... 27 7.1
01_01_0484 - 3558941-3559303,3559439-3559560,3560596-3560743,356... 27 7.1
12_01_0052 + 433203-433292,433409-433815,434435-434447,437081-43... 27 9.3
11_01_0051 + 391254-391343,391460-391862,392345-392352,393627-39... 27 9.3
07_03_0298 + 16384922-16385383,16387540-16388562 27 9.3
04_01_0377 - 4970034-4970687 27 9.3
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251... 27 9.3
02_01_0360 - 2594534-2594601,2594778-2594829,2594915-2595029,259... 27 9.3
02_01_0354 + 2551675-2551874,2552721-2552833,2552982-2553170,255... 27 9.3
01_06_1031 - 33945681-33945822,33946502-33946641,33946748-339469... 27 9.3
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 124 bits (300), Expect = 3e-29
Identities = 65/102 (63%), Positives = 77/102 (75%), Gaps = 8/102 (7%)
Frame = +2
Query: 227 DETGRPDKQ------RVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIV 382
D+ G P KQ RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSV+ LVIV
Sbjct: 57 DKQGFPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIV 116
Query: 383 RKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRY 508
+KG ++PGLTD PR GPKRASKIRKLFNLSK+DDVR+Y
Sbjct: 117 KKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKY 158
Score = 84.6 bits (200), Expect = 4e-17
Identities = 36/58 (62%), Positives = 45/58 (77%)
Frame = +3
Query: 75 CQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLT 248
CQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQGFPMKQGVLT
Sbjct: 12 CQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLT 69
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 123 bits (296), Expect = 1e-28
Identities = 64/102 (62%), Positives = 77/102 (75%), Gaps = 8/102 (7%)
Frame = +2
Query: 227 DETGRPDKQ------RVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIV 382
D+ G P KQ RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSV+ LVIV
Sbjct: 57 DKQGFPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIV 116
Query: 383 RKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRY 508
+KG ++PGLTD PR GPKRASKIRKLFNL+K+DDVR+Y
Sbjct: 117 KKGDNDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKY 158
Score = 86.6 bits (205), Expect = 1e-17
Identities = 37/59 (62%), Positives = 46/59 (77%)
Frame = +3
Query: 75 CQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTN 251
CQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQGFPMKQGVLT+
Sbjct: 12 CQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTS 70
>09_04_0727 +
19765175-19765384,19765523-19765595,19766476-19766570,
19766666-19768450,19768533-19768721,19768816-19768958,
19769075-19769320,19769975-19770059,19770117-19770191,
19770304-19770369,19770466-19770712,19770824-19771242
Length = 1210
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +2
Query: 197 RWRQRQARIPDE-TGRPDKQRVRLLMSKGHSCYRPRRDGERKRKSVRG 337
R+R + ++ DE + RP ++++ +S PRR+G R R+S+RG
Sbjct: 129 RYRSSKNKVDDEVSARPKRKKL------SNSSSIPRREGLRPRRSIRG 170
>08_02_0911 +
22530370-22530497,22531083-22531126,22531224-22531267,
22531428-22531946,22532032-22532257,22532336-22532662,
22532915-22533165,22533374-22534072
Length = 745
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 270 IRRRTRCLSGRPVSSGILACRCRQRHEVHSPSIHRLTDQPLLRR 139
+ +RTR L V I+ RCR R+ H L D+ L+R+
Sbjct: 83 VHQRTRTLGVLAVVLAIIHWRCRIRNRRHPRKYGPLVDRDLVRK 126
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +2
Query: 209 RQARIPDET--GRPDKQRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIV 382
++ +IP + GR +K+R S + + PRR R + R C++D + + +
Sbjct: 629 QRGQIPSDALPGRTNKKR----KSTADTSFNPRRRTSRPENASRACVLDGSTTQNRFQFI 684
Query: 383 RKGAQ 397
R+ A+
Sbjct: 685 REEAE 689
>01_07_0254 +
42318181-42319471,42319581-42319792,42319909-42320132,
42320232-42321009
Length = 834
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 78 QKLF-EVVDEHKLRIFYEKRMGAEVEADQLG 167
+KL+ E+ DE KLRI YEK+ D+ G
Sbjct: 494 KKLYQEIKDEEKLRILYEKKYRRLKSLDERG 524
>01_01_0484 -
3558941-3559303,3559439-3559560,3560596-3560743,
3560853-3561491,3562154-3562450,3562553-3563407,
3564363-3564545,3565041-3565118,3565762-3565974,
3566075-3566238,3566357-3566445,3566761-3566891,
3566980-3567148,3567255-3567327,3567525-3567606,
3567677-3567808,3568743-3568818,3568965-3569065,
3569446-3569636,3569738-3569912,3570604-3570854,
3571327-3571603,3572184-3572267,3572496-3573206
Length = 1867
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 101 VHHFEQLLACPLPGTKRLTS*LRSIPSNVSH 9
VHHF + + C LP + S +S+ S SH
Sbjct: 365 VHHFSEEIVCVLPVINLVISPSKSVKSVASH 395
>12_01_0052 +
433203-433292,433409-433815,434435-434447,437081-437473
Length = 300
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 99 PPLRTTSGMPVAGYETFNFMTAVNP 25
PP+R T G+PV G+ F+ A NP
Sbjct: 234 PPMRNTVGVPVNGWAVIRFV-ADNP 257
>11_01_0051 +
391254-391343,391460-391862,392345-392352,393627-393704,
395371-395763
Length = 323
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 99 PPLRTTSGMPVAGYETFNFMTAVNP 25
PP+R T G+PV G+ F+ A NP
Sbjct: 257 PPMRNTVGVPVNGWAVIRFV-ADNP 280
>07_03_0298 + 16384922-16385383,16387540-16388562
Length = 494
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 29 LTAVMKLNVSYPATGMPEVVRSGG 100
LTA+ K +S PA P VVR G
Sbjct: 18 LTALQKRKISSPAAAAPPVVRGAG 41
>04_01_0377 - 4970034-4970687
Length = 217
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = +1
Query: 328 SSWMYC*RQSLGLGSCYCAQGCPGNSWID*WKCTPPSRSQTCFQN 462
S W YC GLGS +C GC + +C + C N
Sbjct: 123 SQWGYC-----GLGSEFCGNGCQSGACCPEKRCGKQAGGDKCPNN 162
>03_05_1091 +
30322035-30322739,30322861-30324043,30324114-30325105,
30326409-30326798,30326896-30330060
Length = 2144
Score = 27.1 bits (57), Expect = 9.3
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +2
Query: 203 RQRQARIPDETGRPDKQRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALV 376
R QA+ P E R K R GH R D +R+R++ C +SVL L+
Sbjct: 63 RAVQAKPPVEPPRRRKARDAADHDIGH-----RLDAKRRRRAASACTAQREVSVLTLI 115
>02_01_0360 -
2594534-2594601,2594778-2594829,2594915-2595029,
2595124-2595212,2595326-2595391,2595468-2595657,
2595811-2596037,2596111-2596185,2596283-2596354,
2596507-2596577,2596848-2597036,2597186-2597298,
2598063-2598268
Length = 510
Score = 27.1 bits (57), Expect = 9.3
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 122 KDTKLVLVHHFEQLLACPLP 63
+D+++++V HF LL C LP
Sbjct: 425 RDSEILIVSHFSLLLGCALP 444
>02_01_0354 +
2551675-2551874,2552721-2552833,2552982-2553170,
2553667-2553737,2553835-2553909,2553983-2554209,
2554361-2554550,2554627-2554692,2554807-2554895,
2554990-2555104,2555190-2555241,2555317-2555417,
2555516-2555629
Length = 533
Score = 27.1 bits (57), Expect = 9.3
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 122 KDTKLVLVHHFEQLLACPLP 63
+D+++++V HF LL C LP
Sbjct: 399 RDSEILIVSHFSLLLGCALP 418
>01_06_1031 -
33945681-33945822,33946502-33946641,33946748-33946995,
33947355-33947576,33948188-33948839
Length = 467
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 221 IPDETGRPDKQRVRLLMSKGHSCYRPRRDGERK 319
I DET ++R+ M++GHS YRP G+ K
Sbjct: 432 IRDETMYDPRERIE--MAQGHSLYRPSLLGQPK 462
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,965,099
Number of Sequences: 37544
Number of extensions: 358095
Number of successful extensions: 1051
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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