Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30581.Seq
         (528 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)              157   4e-39
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   35   0.036
SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)                      29   2.4  
SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)                      29   3.1  
SB_50233| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_37092| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
          Length = 212

 Score =  157 bits (382), Expect = 4e-39
 Identities = 80/121 (66%), Positives = 91/121 (75%), Gaps = 9/121 (7%)
 Frame = +2

Query: 173 MEGLCTSCRWRQRQARIP---DETGRPDKQ------RVRLLMSKGHSCYRPRRDGERKRK 325
           + G C    W+    RI    D+ G P KQ      RVRLL+SKGHSCYRPRR GERKRK
Sbjct: 3   VSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKRK 62

Query: 326 SVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRR 505
           SVRGCIVD+ LSVL+LVIV+KG Q+IPGLTD  +PRRLGPKR  KIRK+FNLSKEDDVR+
Sbjct: 63  SVRGCIVDSQLSVLSLVIVKKGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVRQ 122

Query: 506 Y 508
           Y
Sbjct: 123 Y 123



 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 27/36 (75%), Positives = 31/36 (86%)
 Frame = +3

Query: 144 EVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTN 251
           EV  + LGDEWKGYV R+ GGNDKQGFPMKQG++TN
Sbjct: 2   EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTN 37


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 35.1 bits (77), Expect = 0.036
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -2

Query: 266 EDEHAVCQDALFHRESLLVVAASDTKYIALPFIA*LISLYFGAHALFVK 120
           E + A+  D L H +SL V+  SD + ++LP I   +  Y   H L ++
Sbjct: 258 EADAAIGHDPLLHGKSLFVITTSDPEDVSLPLIPQALPRYLHGHTLVIE 306


>SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)
          Length = 172

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +2

Query: 329 VRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRK 469
           VR C +D   +VLA  +  + A E  GLT+G V    GP R   +++
Sbjct: 86  VRSCPMDKQSTVLA--VETREACESKGLTEGCVSSAFGPGREEPVQE 130


>SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)
          Length = 1365

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 150 EADQLGDEWKGYVL--RVAGGNDKQGFPMK 233
           E D+ G EW+G+V      G  D QG+ MK
Sbjct: 815 EEDRTGQEWEGHVCDKEPEGKRDNQGYKMK 844


>SB_50233| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 967

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 353 WRQQYIHELIYVFSLHRGAVCNMSGPLTSEDEHAVCQDALF 231
           WR Q+ H   +V +    A+  M   +  ED   VC DA++
Sbjct: 574 WRSQWYHIRAFVLAYTNIALRRMLRRIPREDVLRVCTDAIY 614


>SB_37092| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 120 FYEKRMGAEVEADQLGDEWKGYVL-RVAGGNDKQG 221
           FY K++   ++   L +EW+ +V   +A G DK G
Sbjct: 10  FYNKKLEDYMKNTSLNEEWQDWVRHNIAAGCDKNG 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,058,769
Number of Sequences: 59808
Number of extensions: 405271
Number of successful extensions: 1236
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)