Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30581.Seq
         (528 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)             122   1e-28
At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...   122   2e-28
At1g67280.1 68414.m07657 lactoylglutathione lyase, putative / gl...    29   1.9  
At1g21740.1 68414.m02721 expressed protein contains Pfam domains...    29   1.9  
At2g40370.1 68415.m04978 laccase, putative / diphenol oxidase, p...    28   4.5  
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica...    28   4.5  
At5g39430.1 68418.m04776 hypothetical protein                          27   5.9  
At2g34070.1 68415.m04171 expressed protein                             27   5.9  
At5g49340.1 68418.m06105 expressed protein similar to unknown pr...    27   7.8  
At4g31240.2 68417.m04435 expressed protein                             27   7.8  
At4g31240.1 68417.m04434 expressed protein                             27   7.8  

>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score =  122 bits (295), Expect = 1e-28
 Identities = 65/102 (63%), Positives = 75/102 (73%), Gaps = 8/102 (7%)
 Frame = +2

Query: 227 DETGRPDKQ------RVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIV 382
           D+ G P KQ      RVRLL+ +G  C+R   RR GER+RKSVRGCIV  +LSVL LVIV
Sbjct: 57  DKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIV 116

Query: 383 RKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRY 508
           +KG  ++PGLTD   PR  GPKRASKIRKLFNL KEDDVR+Y
Sbjct: 117 KKGVSDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKY 158



 Score = 85.0 bits (201), Expect = 3e-17
 Identities = 36/58 (62%), Positives = 45/58 (77%)
 Frame = +3

Query: 75  CQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLT 248
           CQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQGFPMKQGVLT
Sbjct: 12  CQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLT 69


>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score =  122 bits (293), Expect = 2e-28
 Identities = 71/158 (44%), Positives = 87/158 (55%), Gaps = 2/158 (1%)
 Frame = +2

Query: 41  MKLNVSYPATGMPEVVRSGGRAQASYLLRKAHXXXXXXXXXXXXMEGLCTSCRWRQRQAR 220
           MK NV+ P TG  + +      +      K               +G     +    +  
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60

Query: 221 IPDETGRPDKQRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGA 394
            P + G     RVRLL+ +G  C+R   RR GER+RKSVRGCIV  +LSVL LVIV+KG 
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120

Query: 395 QEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRY 508
            ++PGLTD   PR  GPKRASKIRKLFNL KEDDVR Y
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTY 158


>At1g67280.1 68414.m07657 lactoylglutathione lyase, putative /
           glyoxalase I, putative similar to putative
           lactoylglutathione lyase SP:Q39366, GI:2494843 from
           [Brassica oleracea]
          Length = 350

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +3

Query: 60  TRQRACQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPM 230
           T +  CQ +  V D  +   FYEK  G E+   +   E+K Y + + G   +  FP+
Sbjct: 215 TPEPLCQVMLRVGDLDRAIKFYEKAFGMELLRTRDNPEYK-YTIAMMGYGPEDKFPV 270


>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 953

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 78  QKLF-EVVDEHKLRIFYEKRMGAEVEADQLGDE 173
           +KL+ EV DE KLR+ YE++     + D LG E
Sbjct: 602 KKLYKEVKDEEKLRVVYEEKCRTLKKLDSLGAE 634


>At2g40370.1 68415.m04978 laccase, putative / diphenol oxidase,
           putative similar to laccase [Populus balsamifera subsp.
           trichocarpa][GI:3805960]
          Length = 580

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 99  PPLRTTSGMPVAGYETFNFMTAVNP 25
           PPLR T G+PV G+    F+ A NP
Sbjct: 514 PPLRNTVGVPVNGWAVIRFI-ADNP 537


>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to RAD54
           [Drosophila melanogaster] GI:1765914; contains Pfam
           profiles PF00271: Helicase conserved C-terminal domain,
           PF00176: SNF2 family N-terminal domain
          Length = 888

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 398 EIPGLTDGNVPRRLGPKRASKIRKL 472
           E+PGL D  V   L PK+ ++++KL
Sbjct: 620 ELPGLADFTVVLNLSPKQLNEVKKL 644


>At5g39430.1 68418.m04776 hypothetical protein 
          Length = 511

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 431 RRLGPKRASKIRKLFNLSKEDDVRRYS 511
           RRL P+R  + R   N+SK  D+RR S
Sbjct: 10  RRLRPRRKGRRRFSKNISKVSDIRRLS 36


>At2g34070.1 68415.m04171 expressed protein
          Length = 385

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +2

Query: 236 GRPDKQRVRLLMSKGHSCYRPRRDGERKRKSVRG 337
           GRPDKQ ++       SC  PR DGE   K  RG
Sbjct: 99  GRPDKQFLKYSWQPD-SCTVPRFDGEAFLKKWRG 131


>At5g49340.1 68418.m06105 expressed protein similar to unknown
           protein (emb|CAB82953.1)
          Length = 457

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 230 ETGRPDKQRVRLLMSKGHSCYRPRRDGERKRKSVRG 337
           + GRPD   +R      H C  PR DG++  K +RG
Sbjct: 132 KNGRPDSGFLRHRWQP-HGCSIPRFDGKKMLKMLRG 166


>At4g31240.2 68417.m04435 expressed protein
          Length = 392

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 236 LFHRESLLVVAASDTKYIALPFIA*LISLYFGAH 135
           L H     VVA + +K +    +   I LYFGAH
Sbjct: 180 LTHESRNYVVARNGSKVLVSKLVGKTIGLYFGAH 213


>At4g31240.1 68417.m04434 expressed protein
          Length = 392

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 236 LFHRESLLVVAASDTKYIALPFIA*LISLYFGAH 135
           L H     VVA + +K +    +   I LYFGAH
Sbjct: 180 LTHESRNYVVARNGSKVLVSKLVGKTIGLYFGAH 213


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,315,042
Number of Sequences: 28952
Number of extensions: 265711
Number of successful extensions: 688
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)