Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30580.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch...    79   5e-16
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ...    34   0.014
SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase ...    25   8.4  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    25   8.4  

>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
           45|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 558

 Score = 79.0 bits (186), Expect = 5e-16
 Identities = 36/72 (50%), Positives = 48/72 (66%)
 Frame = +1

Query: 244 SFYTPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDEEXAVREVQEVFADY 423
           +F  PT   + LL  ELRDPKY  Y +YF+NV+ K+ ++ LAE D+  AV+ +QE F DY
Sbjct: 68  AFLRPTPTTLRLLCEELRDPKYAEYHLYFTNVIPKSFLERLAESDDFEAVKSIQEFFLDY 127

Query: 424 LAVDRHLXSFNI 459
           L V+  L SFNI
Sbjct: 128 LVVNNDLASFNI 139



 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 20/73 (27%), Positives = 47/73 (64%)
 Frame = +2

Query: 35  MNVIQAVKMYITKMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDSHAK 214
           M+++ A + Y  ++       +K++L++++TT IVS   +QS +L++++YL   + +  K
Sbjct: 1   MDLVSASQSYFKRIFQEVSD-LKILLLEEDTTKIVSSCITQSNLLEQQIYLTVLLGN--K 57

Query: 215 WDNMKHMKCIVFI 253
            + ++H+KC+ F+
Sbjct: 58  REKLRHLKCVAFL 70


>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 639

 Score = 34.3 bits (75), Expect = 0.014
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +1

Query: 247 FYTPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAE-CDEEXAVREVQEVFADY 423
           F  PT ENI L+  +L    Y   ++ FS+ +S+A ++  AE   +      + +V+  Y
Sbjct: 94  FVQPTQENIELIIEDLSKGLYESAYVCFSSTISRALLEQFAELASKTNTSHMIHQVYDQY 153

Query: 424 L 426
           L
Sbjct: 154 L 154


>SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase
           Atp23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 185

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/50 (18%), Positives = 25/50 (50%)
 Frame = +2

Query: 92  PGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDSHAKWDNMKHMKC 241
           PG  ++L +     + +   +++ I  + +++F+       W+N++H  C
Sbjct: 63  PGKGIVLCENR---LYTKKMAENTIAHEMIHMFDDHRFEVDWNNLRHQAC 109


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 405 LDLSDSXLLITFGQSFDVCLRNYITEIYKVNTIFRISQF 289
           LDLS   L+ T  ++FD  + + +  +   N   RIS F
Sbjct: 785 LDLSTLRLIRTDSEAFDTFVSDELNSLCATNAYNRISTF 823


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,090,989
Number of Sequences: 5004
Number of extensions: 38968
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)