Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30580.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0030 - 14083117-14083166,14083620-14083689,14083777-140838...    65   4e-11
12_01_0889 - 8567209-8567490,8567539-8568009,8568116-8568136           29   2.8  

>02_03_0030 -
           14083117-14083166,14083620-14083689,14083777-14083857,
           14083940-14084065,14084916-14085143,14085246-14085325,
           14086567-14086768,14086857-14086946
          Length = 308

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 28/71 (39%), Positives = 46/71 (64%)
 Frame = +1

Query: 247 FYTPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDEEXAVREVQEVFADYL 426
           F  P+S+N+  L R L  P++  Y ++FSNV+    I+ LA+ DE+  V++VQE +AD+ 
Sbjct: 72  FLRPSSDNVQKLRRHLAAPRFAEYHLFFSNVLKIPQIQVLADSDEQEVVQQVQEFYADFC 131

Query: 427 AVDRHLXSFNI 459
           A+D +  + NI
Sbjct: 132 AIDPYHFTLNI 142



 Score = 64.5 bits (150), Expect = 6e-11
 Identities = 30/74 (40%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
 Frame = +2

Query: 35  MNVIQAVKMYITKMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERID-SHA 211
           M +I  ++ YI +M     PGMKV+++D +T  +VS+VYSQS++L+KEV+L E +D + +
Sbjct: 1   MTLITLIRDYIDRMLHDI-PGMKVLVLDPDTVGMVSVVYSQSDLLRKEVFLVETVDNASS 59

Query: 212 KWDNMKHMKCIVFI 253
             ++M H+K + F+
Sbjct: 60  SRESMAHLKAVYFL 73


>12_01_0889 - 8567209-8567490,8567539-8568009,8568116-8568136
          Length = 257

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 121 RNYQHSEYGVQSIGNLTEGSLLIREDRQSCQMG*HETHEMHS 246
           R+  HS+YG   +G L + +L+  +D +  Q    ET E HS
Sbjct: 141 RDDPHSDYGKTLMGILPDNTLIEEDDLRFIQKDSGETLEFHS 182


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,054,859
Number of Sequences: 37544
Number of extensions: 226528
Number of successful extensions: 448
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)