Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30580.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49958| Best HMM Match : Mak10 (HMM E-Value=7.7)                    105   4e-23
SB_50530| Best HMM Match : Pencillinase_R (HMM E-Value=3.3)            29   2.9  
SB_34467| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_26279| Best HMM Match : S-antigen (HMM E-Value=3)                   29   3.8  
SB_59326| Best HMM Match : FtsX (HMM E-Value=2.2)                      28   6.6  
SB_31215| Best HMM Match : Acid_phosphat_A (HMM E-Value=2.6e-26)       27   8.7  

>SB_49958| Best HMM Match : Mak10 (HMM E-Value=7.7)
          Length = 176

 Score =  105 bits (251), Expect = 4e-23
 Identities = 50/73 (68%), Positives = 60/73 (82%)
 Frame = +2

Query: 35  MNVIQAVKMYITKMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDSHAK 214
           MNVI AVK Y+TKM   SG GMKV+LMDKETT IVSMVYSQ+E+LQKEVYLFER+D+  +
Sbjct: 1   MNVILAVKQYVTKMIEESGAGMKVLLMDKETTGIVSMVYSQTEVLQKEVYLFERVDTPGR 60

Query: 215 WDNMKHMKCIVFI 253
            + MKH+K I F+
Sbjct: 61  -ETMKHLKAICFL 72



 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 19/36 (52%), Positives = 25/36 (69%)
 Frame = +1

Query: 349 ADIKTLAECDEEXAVREVQEVFADYLAVDRHLXSFN 456
           A I+ LAE D++  VREVQE +ADY A+  H+ S N
Sbjct: 77  ASIRALAEADDQEVVREVQEYYADYFAISPHVFSLN 112


>SB_50530| Best HMM Match : Pencillinase_R (HMM E-Value=3.3)
          Length = 356

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -1

Query: 166 DFRLTVHHTHYAGSFFIH*YHFHSRAAXXPHFSNVHFNCLYHIHFD 29
           D+    H+ +Y    + + YH+H       H+ + H++  YH H+D
Sbjct: 303 DYYYHYHYYYYYDYHYHYDYHYHYDYHYDYHY-DYHYHYDYHYHYD 347


>SB_34467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 524

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -2

Query: 138 TMLVVSLSINITFIPGPLSXXILVMYIL--TACITFILIKLSLFIS 7
           T  + SLS ++TF+ GPL+  +   Y +   A +  IL  L LF S
Sbjct: 57  TAWIASLSFSLTFMLGPLTTSLCTKYGVRSVAVLGAILFALGLFCS 102


>SB_26279| Best HMM Match : S-antigen (HMM E-Value=3)
          Length = 613

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
 Frame = -1

Query: 145 HTHYAGSFFIH*YH----FHSRAAXXPHFSNVHFNCLYHIHF 32
           HTH+     I  YH    FH+     P FS  H    +H HF
Sbjct: 78  HTHFTQCPDISEYHAMLTFHTHFTQCPDFSEYHAMLPFHTHF 119



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
 Frame = -1

Query: 145 HTHYAGSFFIH*YH----FHSRAAXXPHFSNVHFNCLYHIHF 32
           HTH+        YH    FH+     P FS  H    +H HF
Sbjct: 97  HTHFTQCPDFSEYHAMLPFHTHFTQCPDFSEYHVMLPFHTHF 138


>SB_59326| Best HMM Match : FtsX (HMM E-Value=2.2)
          Length = 238

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -1

Query: 154 TVHHTHYAGSFFIH*YHFHSRAAXXPHFSNVHFNCLY--HIHFD*IILI 14
           ++HH +    +F H Y++H +     H  + H +  Y  H H D  I+I
Sbjct: 79  SIHHRYR--DYFYHSYNYHHKWQHYHHHHHYHHHLDYDHHYHHDLFIII 125


>SB_31215| Best HMM Match : Acid_phosphat_A (HMM E-Value=2.6e-26)
          Length = 448

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 316 YFIYFSNVVSKADIKTLAECDEEXAVRE 399
           +F  FS V +  D+K L E D++  VRE
Sbjct: 419 FFDCFSEVYNMCDLKALCELDKKAQVRE 446


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,314,622
Number of Sequences: 59808
Number of extensions: 269583
Number of successful extensions: 582
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)