Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30580.Seq
(598 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U35246-1|AAC50931.1| 570|Homo sapiens vacuolar protein sorting ... 112 1e-24
BC028382-1|AAH28382.1| 570|Homo sapiens vacuolar protein sortin... 111 2e-24
BC012932-1|AAH12932.1| 570|Homo sapiens vacuolar protein sortin... 111 2e-24
AL358073-4|CAI14265.1| 570|Homo sapiens vacuolar protein sortin... 111 2e-24
AK223214-1|BAD96934.1| 570|Homo sapiens vacuolar protein sortin... 111 2e-24
AK023170-1|BAB14443.1| 570|Homo sapiens protein ( Homo sapiens ... 111 2e-24
AJ133421-1|CAB40417.1| 570|Homo sapiens vacuolar protein sortin... 111 2e-24
AF165513-1|AAF86643.1| 570|Homo sapiens vacuolar protein sortin... 111 2e-24
AL358073-5|CAI14266.1| 316|Homo sapiens vacuolar protein sortin... 107 4e-23
BC017734-1|AAH17734.1| 642|Homo sapiens sec1 family domain cont... 40 0.007
AK222820-1|BAD96540.1| 642|Homo sapiens vesicle transport-relat... 40 0.007
AF110646-1|AAD48586.1| 638|Homo sapiens vesicle transport-relat... 40 0.007
AF086916-1|AAP97146.1| 617|Homo sapiens sly1p protein. 40 0.007
AB020724-1|BAA74940.2| 648|Homo sapiens KIAA0917 protein protein. 40 0.007
>U35246-1|AAC50931.1| 570|Homo sapiens vacuolar protein sorting
homolog h-vps45 protein.
Length = 570
Score = 112 bits (269), Expect = 1e-24
Identities = 53/111 (47%), Positives = 70/111 (63%)
Frame = +1
Query: 247 FYTPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDEEXAVREVQEVFADYL 426
F PT EN+ L +ELR PKY +YFIYFSNV+SK+D+K+LAE DE+ V EVQE + DY+
Sbjct: 71 FLRPTKENVDSLIQELRRPKYSIYFIYFSNVISKSDVKSLAEADEQEVVAEVQEFYGDYI 130
Query: 427 AVDRHLXSFNIVGXLQGRVWNQQHLQRVLKVCXRSSCXCXXRACVRYEXAS 579
AV+ HL S NI+G QGR W+ L R + +RY+ +S
Sbjct: 131 AVNPHLFSLNILGCCQGRNWDPAQLSRTTQGLTALLLSLKKCPMIRYQLSS 181
Score = 107 bits (256), Expect = 4e-23
Identities = 53/73 (72%), Positives = 61/73 (83%)
Frame = +2
Query: 35 MNVIQAVKMYITKMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDSHAK 214
MNV+ AVK YI+KM SGPGMKV+LMDKETT IVSMVY+QSEILQKEVYLFERIDS +
Sbjct: 1 MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDSQNR 60
Query: 215 WDNMKHMKCIVFI 253
+ MKH+K I F+
Sbjct: 61 -EIMKHLKAICFL 72
>BC028382-1|AAH28382.1| 570|Homo sapiens vacuolar protein sorting
45 homolog (S. cerevisiae) protein.
Length = 570
Score = 111 bits (266), Expect = 2e-24
Identities = 52/111 (46%), Positives = 70/111 (63%)
Frame = +1
Query: 247 FYTPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDEEXAVREVQEVFADYL 426
F PT EN+ + +ELR PKY +YFIYFSNV+SK+D+K+LAE DE+ V EVQE + DY+
Sbjct: 71 FLRPTKENVDYIIQELRRPKYTIYFIYFSNVISKSDVKSLAEADEQEVVAEVQEFYGDYI 130
Query: 427 AVDRHLXSFNIVGXLQGRVWNQQHLQRVLKVCXRSSCXCXXRACVRYEXAS 579
AV+ HL S NI+G QGR W+ L R + +RY+ +S
Sbjct: 131 AVNPHLFSLNILGCCQGRNWDPAQLSRTTQGLTALLLSLKKCPMIRYQLSS 181
Score = 107 bits (256), Expect = 4e-23
Identities = 53/73 (72%), Positives = 61/73 (83%)
Frame = +2
Query: 35 MNVIQAVKMYITKMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDSHAK 214
MNV+ AVK YI+KM SGPGMKV+LMDKETT IVSMVY+QSEILQKEVYLFERIDS +
Sbjct: 1 MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDSQNR 60
Query: 215 WDNMKHMKCIVFI 253
+ MKH+K I F+
Sbjct: 61 -EIMKHLKAICFL 72
>BC012932-1|AAH12932.1| 570|Homo sapiens vacuolar protein sorting
45 homolog (S. cerevisiae) protein.
Length = 570
Score = 111 bits (266), Expect = 2e-24
Identities = 52/111 (46%), Positives = 70/111 (63%)
Frame = +1
Query: 247 FYTPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDEEXAVREVQEVFADYL 426
F PT EN+ + +ELR PKY +YFIYFSNV+SK+D+K+LAE DE+ V EVQE + DY+
Sbjct: 71 FLRPTKENVDYIIQELRRPKYTIYFIYFSNVISKSDVKSLAEADEQEVVAEVQEFYGDYI 130
Query: 427 AVDRHLXSFNIVGXLQGRVWNQQHLQRVLKVCXRSSCXCXXRACVRYEXAS 579
AV+ HL S NI+G QGR W+ L R + +RY+ +S
Sbjct: 131 AVNPHLFSLNILGCCQGRNWDPAQLSRTTQGLTALLLSLKKCPMIRYQLSS 181
Score = 107 bits (256), Expect = 4e-23
Identities = 53/73 (72%), Positives = 61/73 (83%)
Frame = +2
Query: 35 MNVIQAVKMYITKMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDSHAK 214
MNV+ AVK YI+KM SGPGMKV+LMDKETT IVSMVY+QSEILQKEVYLFERIDS +
Sbjct: 1 MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDSQNR 60
Query: 215 WDNMKHMKCIVFI 253
+ MKH+K I F+
Sbjct: 61 -EIMKHLKAICFL 72
>AL358073-4|CAI14265.1| 570|Homo sapiens vacuolar protein sorting
45 homolog (S. cerevisiae) protein.
Length = 570
Score = 111 bits (266), Expect = 2e-24
Identities = 52/111 (46%), Positives = 70/111 (63%)
Frame = +1
Query: 247 FYTPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDEEXAVREVQEVFADYL 426
F PT EN+ + +ELR PKY +YFIYFSNV+SK+D+K+LAE DE+ V EVQE + DY+
Sbjct: 71 FLRPTKENVDYIIQELRRPKYTIYFIYFSNVISKSDVKSLAEADEQEVVAEVQEFYGDYI 130
Query: 427 AVDRHLXSFNIVGXLQGRVWNQQHLQRVLKVCXRSSCXCXXRACVRYEXAS 579
AV+ HL S NI+G QGR W+ L R + +RY+ +S
Sbjct: 131 AVNPHLFSLNILGCCQGRNWDPAQLSRTTQGLTALLLSLKKCPMIRYQLSS 181
Score = 107 bits (256), Expect = 4e-23
Identities = 53/73 (72%), Positives = 61/73 (83%)
Frame = +2
Query: 35 MNVIQAVKMYITKMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDSHAK 214
MNV+ AVK YI+KM SGPGMKV+LMDKETT IVSMVY+QSEILQKEVYLFERIDS +
Sbjct: 1 MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDSQNR 60
Query: 215 WDNMKHMKCIVFI 253
+ MKH+K I F+
Sbjct: 61 -EIMKHLKAICFL 72
>AK223214-1|BAD96934.1| 570|Homo sapiens vacuolar protein sorting
45A variant protein.
Length = 570
Score = 111 bits (266), Expect = 2e-24
Identities = 52/111 (46%), Positives = 70/111 (63%)
Frame = +1
Query: 247 FYTPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDEEXAVREVQEVFADYL 426
F PT EN+ + +ELR PKY +YFIYFSNV+SK+D+K+LAE DE+ V EVQE + DY+
Sbjct: 71 FLRPTKENVDYIIQELRRPKYTIYFIYFSNVISKSDVKSLAEADEQEVVAEVQEFYGDYI 130
Query: 427 AVDRHLXSFNIVGXLQGRVWNQQHLQRVLKVCXRSSCXCXXRACVRYEXAS 579
AV+ HL S NI+G QGR W+ L R + +RY+ +S
Sbjct: 131 AVNPHLFSLNILGCCQGRNWDPAQLSRTTQGLAALLLSLKKCPMIRYQLSS 181
Score = 107 bits (256), Expect = 4e-23
Identities = 53/73 (72%), Positives = 61/73 (83%)
Frame = +2
Query: 35 MNVIQAVKMYITKMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDSHAK 214
MNV+ AVK YI+KM SGPGMKV+LMDKETT IVSMVY+QSEILQKEVYLFERIDS +
Sbjct: 1 MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDSQNR 60
Query: 215 WDNMKHMKCIVFI 253
+ MKH+K I F+
Sbjct: 61 -EIMKHLKAICFL 72
>AK023170-1|BAB14443.1| 570|Homo sapiens protein ( Homo sapiens
cDNA FLJ13108 fis, clone NT2RP3002529, weakly similar to
VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS45. ).
Length = 570
Score = 111 bits (266), Expect = 2e-24
Identities = 52/111 (46%), Positives = 70/111 (63%)
Frame = +1
Query: 247 FYTPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDEEXAVREVQEVFADYL 426
F PT EN+ + +ELR PKY +YFIYFSNV+SK+D+K+LAE DE+ V EVQE + DY+
Sbjct: 71 FLRPTKENVDYIIQELRRPKYTIYFIYFSNVISKSDVKSLAEADEQEVVAEVQEFYGDYI 130
Query: 427 AVDRHLXSFNIVGXLQGRVWNQQHLQRVLKVCXRSSCXCXXRACVRYEXAS 579
AV+ HL S NI+G QGR W+ L R + +RY+ +S
Sbjct: 131 AVNPHLFSLNILGCCQGRNWDPAQLSRTTQGLTALLLSLKKCPMIRYQLSS 181
Score = 107 bits (256), Expect = 4e-23
Identities = 53/73 (72%), Positives = 61/73 (83%)
Frame = +2
Query: 35 MNVIQAVKMYITKMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDSHAK 214
MNV+ AVK YI+KM SGPGMKV+LMDKETT IVSMVY+QSEILQKEVYLFERIDS +
Sbjct: 1 MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDSQNR 60
Query: 215 WDNMKHMKCIVFI 253
+ MKH+K I F+
Sbjct: 61 -EIMKHLKAICFL 72
>AJ133421-1|CAB40417.1| 570|Homo sapiens vacuolar protein sorting
protein.
Length = 570
Score = 111 bits (266), Expect = 2e-24
Identities = 52/111 (46%), Positives = 70/111 (63%)
Frame = +1
Query: 247 FYTPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDEEXAVREVQEVFADYL 426
F PT EN+ + +ELR PKY +YFIYFSNV+SK+D+K+LAE DE+ V EVQE + DY+
Sbjct: 71 FLRPTKENVDYIIQELRRPKYTIYFIYFSNVISKSDVKSLAEADEQEVVAEVQEFYGDYI 130
Query: 427 AVDRHLXSFNIVGXLQGRVWNQQHLQRVLKVCXRSSCXCXXRACVRYEXAS 579
AV+ HL S NI+G QGR W+ L R + +RY+ +S
Sbjct: 131 AVNPHLFSLNILGCCQGRNWDPAQLSRTTQGLTALLLSLKKCPMIRYQLSS 181
Score = 107 bits (256), Expect = 4e-23
Identities = 53/73 (72%), Positives = 61/73 (83%)
Frame = +2
Query: 35 MNVIQAVKMYITKMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDSHAK 214
MNV+ AVK YI+KM SGPGMKV+LMDKETT IVSMVY+QSEILQKEVYLFERIDS +
Sbjct: 1 MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDSQNR 60
Query: 215 WDNMKHMKCIVFI 253
+ MKH+K I F+
Sbjct: 61 -EIMKHLKAICFL 72
>AF165513-1|AAF86643.1| 570|Homo sapiens vacuolar protein sorting
45 isoform protein.
Length = 570
Score = 111 bits (266), Expect = 2e-24
Identities = 52/111 (46%), Positives = 70/111 (63%)
Frame = +1
Query: 247 FYTPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDEEXAVREVQEVFADYL 426
F PT EN+ + +ELR PKY +YFIYFSNV+SK+D+K+LAE DE+ V EVQE + DY+
Sbjct: 71 FLRPTKENVDYIIQELRRPKYTIYFIYFSNVISKSDVKSLAEADEQEVVAEVQEFYGDYI 130
Query: 427 AVDRHLXSFNIVGXLQGRVWNQQHLQRVLKVCXRSSCXCXXRACVRYEXAS 579
AV+ HL S NI+G QGR W+ L R + +RY+ +S
Sbjct: 131 AVNPHLFSLNILGCCQGRNWDPAQLSRTTQGLTALLLSLKKCPMIRYQLSS 181
Score = 107 bits (256), Expect = 4e-23
Identities = 53/73 (72%), Positives = 61/73 (83%)
Frame = +2
Query: 35 MNVIQAVKMYITKMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDSHAK 214
MNV+ AVK YI+KM SGPGMKV+LMDKETT IVSMVY+QSEILQKEVYLFERIDS +
Sbjct: 1 MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDSQNR 60
Query: 215 WDNMKHMKCIVFI 253
+ MKH+K I F+
Sbjct: 61 -EIMKHLKAICFL 72
>AL358073-5|CAI14266.1| 316|Homo sapiens vacuolar protein sorting
45 homolog (S. cerevisiae) protein.
Length = 316
Score = 107 bits (256), Expect = 4e-23
Identities = 53/73 (72%), Positives = 61/73 (83%)
Frame = +2
Query: 35 MNVIQAVKMYITKMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDSHAK 214
MNV+ AVK YI+KM SGPGMKV+LMDKETT IVSMVY+QSEILQKEVYLFERIDS +
Sbjct: 1 MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDSQNR 60
Query: 215 WDNMKHMKCIVFI 253
+ MKH+K I F+
Sbjct: 61 -EIMKHLKAICFL 72
Score = 76.6 bits (180), Expect = 6e-14
Identities = 33/55 (60%), Positives = 43/55 (78%)
Frame = +1
Query: 247 FYTPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDEEXAVREVQEV 411
F PT EN+ + +ELR PKY +YFIYFSNV+SK+D+K+LAE DE+ V EVQ+V
Sbjct: 71 FLRPTKENVDYIIQELRRPKYTIYFIYFSNVISKSDVKSLAEADEQEVVAEVQQV 125
>BC017734-1|AAH17734.1| 642|Homo sapiens sec1 family domain
containing 1 protein.
Length = 642
Score = 39.9 bits (89), Expect = 0.007
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +1
Query: 247 FYTPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECD-EEXAVREVQEVFADY 423
F PT ENI + ++LR+ Y Y++ F + +S++ ++ +A AV +V +VF Y
Sbjct: 91 FVMPTEENIDRMCQDLRNQLYESYYLNFISAISRSKLEDIANAALAASAVTQVAKVFDQY 150
Query: 424 L 426
L
Sbjct: 151 L 151
>AK222820-1|BAD96540.1| 642|Homo sapiens vesicle transport-related
protein isoform a variant protein.
Length = 642
Score = 39.9 bits (89), Expect = 0.007
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +1
Query: 247 FYTPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECD-EEXAVREVQEVFADY 423
F PT ENI + ++LR+ Y Y++ F + +S++ ++ +A AV +V +VF Y
Sbjct: 91 FVMPTEENIDRMCQDLRNQLYESYYLNFISAISRSKLEDIANAALAASAVTQVAKVFDQY 150
Query: 424 L 426
L
Sbjct: 151 L 151
>AF110646-1|AAD48586.1| 638|Homo sapiens vesicle transport-related
protein protein.
Length = 638
Score = 39.9 bits (89), Expect = 0.007
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +1
Query: 247 FYTPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECD-EEXAVREVQEVFADY 423
F PT ENI + ++LR+ Y Y++ F + +S++ ++ +A AV +V +VF Y
Sbjct: 88 FVMPTEENIDRMCQDLRNQLYESYYLNFISAISRSKLEDIANAALAASAVTQVAKVFDQY 147
Query: 424 L 426
L
Sbjct: 148 L 148
>AF086916-1|AAP97146.1| 617|Homo sapiens sly1p protein.
Length = 617
Score = 39.9 bits (89), Expect = 0.007
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +1
Query: 247 FYTPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECD-EEXAVREVQEVFADY 423
F PT ENI + ++LR+ Y Y++ F + +S++ ++ +A AV +V +VF Y
Sbjct: 66 FVMPTEENIDRMCQDLRNQLYESYYLNFISAISRSKLEDIANAALAASAVTQVAKVFDQY 125
Query: 424 L 426
L
Sbjct: 126 L 126
>AB020724-1|BAA74940.2| 648|Homo sapiens KIAA0917 protein protein.
Length = 648
Score = 39.9 bits (89), Expect = 0.007
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +1
Query: 247 FYTPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECD-EEXAVREVQEVFADY 423
F PT ENI + ++LR+ Y Y++ F + +S++ ++ +A AV +V +VF Y
Sbjct: 97 FVMPTEENIDRMCQDLRNQLYESYYLNFISAISRSKLEDIANAALAASAVTQVAKVFDQY 156
Query: 424 L 426
L
Sbjct: 157 L 157
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,043,428
Number of Sequences: 237096
Number of extensions: 1321952
Number of successful extensions: 2244
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2244
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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