Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30580.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41030-5|AAM51527.1|  132|Caenorhabditis elegans Hypothetical pr...    77   7e-15
U41030-4|AAA82364.1|  547|Caenorhabditis elegans Hypothetical pr...    77   7e-15
Z77134-1|CAB00871.1|  293|Caenorhabditis elegans Hypothetical pr...    31   0.82 
Z92813-5|CAB07285.1|  425|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z83229-2|CAB05739.1| 1589|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>U41030-5|AAM51527.1|  132|Caenorhabditis elegans Hypothetical
           protein C44C1.4b protein.
          Length = 132

 Score = 77.4 bits (182), Expect = 7e-15
 Identities = 32/73 (43%), Positives = 54/73 (73%)
 Frame = +2

Query: 35  MNVIQAVKMYITKMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDSHAK 214
           M+++Q+ +  I  M   +G  MK++LMD ETT  VS  ++QSE++QKEVY+F+RI++   
Sbjct: 1   MDLVQSSRKLIQDMIQLAGSQMKLLLMDGETTPTVSCAFAQSEVMQKEVYIFDRIENKTS 60

Query: 215 WDNMKHMKCIVFI 253
            +N+K++KC+VF+
Sbjct: 61  SENIKNLKCVVFV 73



 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 21/52 (40%), Positives = 36/52 (69%)
 Frame = +1

Query: 247 FYTPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDEEXAVREV 402
           F  PT +NI  L +EL++P++  Y++YF+N ++K D+K LAE D+   + +V
Sbjct: 72  FVRPTPKNIERLVKELQEPRFSQYYLYFTNTINKYDVKRLAEADKNETIPKV 123


>U41030-4|AAA82364.1|  547|Caenorhabditis elegans Hypothetical
           protein C44C1.4a protein.
          Length = 547

 Score = 77.4 bits (182), Expect = 7e-15
 Identities = 32/73 (43%), Positives = 54/73 (73%)
 Frame = +2

Query: 35  MNVIQAVKMYITKMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDSHAK 214
           M+++Q+ +  I  M   +G  MK++LMD ETT  VS  ++QSE++QKEVY+F+RI++   
Sbjct: 1   MDLVQSSRKLIQDMIQLAGSQMKLLLMDGETTPTVSCAFAQSEVMQKEVYIFDRIENKTS 60

Query: 215 WDNMKHMKCIVFI 253
            +N+K++KC+VF+
Sbjct: 61  SENIKNLKCVVFV 73



 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 38/115 (33%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
 Frame = +1

Query: 247 FYTPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDEEXAVREVQEVFADYL 426
           F  PT +NI  L +EL++P++  Y++YF+N ++K D+K LAE D+   VREVQEVF D +
Sbjct: 72  FVRPTPKNIERLVKELQEPRFSQYYLYFTNTINKYDVKRLAEADKNETVREVQEVFLDGV 131

Query: 427 AVDRHLXSFNIVGXLQGRVWNQQHLQRVLKVCXRSSCXCXXRA-CVRYEXASXPC 588
            + + L + N+          ++     +K    +      +A  VRY+ +S  C
Sbjct: 132 PIRKDLFTLNLTHIFDSSFTLKEEAAERIKCGIIALLLQLKKAPAVRYQKSSPSC 186


>Z77134-1|CAB00871.1|  293|Caenorhabditis elegans Hypothetical
           protein R09H10.2 protein.
          Length = 293

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 26/63 (41%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -3

Query: 362 VLMSALETTLLKYIK*TPYLGSLSSRDN-RAMFSDVGV*KLCISCVSCYPIWHDCLSSRI 186
           V  +AL  +LL YI       S+S+    R  FSD  V K+     S Y  WHDCL   I
Sbjct: 8   VFFAALSISLLLYI-------SVSNTPTPRFNFSDSAVSKVW----SNYTAWHDCLMQNI 56

Query: 185 SKL 177
           SKL
Sbjct: 57  SKL 59


>Z92813-5|CAB07285.1|  425|Caenorhabditis elegans Hypothetical
           protein T28A8.5 protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = +1

Query: 178 SLLIREDRQSCQMG*HETHEM-HSFYTPTSENIALLSRELRDPKYGVYFIYFSNVVSKAD 354
           SL+I     SC+    +   + H +Y   S+N  + +    D  Y VY+  F N ++   
Sbjct: 273 SLIIVISTISCEQSKRQRIPLSHWWYQKCSQNTVITTNRENDGSYNVYYDRFHNHLA--- 329

Query: 355 IKTLAECDEEXAVREVQEVF 414
              +A+ +E   V  V+ +F
Sbjct: 330 -PKMAKLEEYSIVERVRVIF 348


>Z83229-2|CAB05739.1| 1589|Caenorhabditis elegans Hypothetical
           protein F54F11.2 protein.
          Length = 1589

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 244 SFYTPTSENIALLSRELRDPKY 309
           SFYT  ++N+  ++++L DP Y
Sbjct: 903 SFYTARAQNLVYMAQKLEDPTY 924


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,604,367
Number of Sequences: 27780
Number of extensions: 216159
Number of successful extensions: 526
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)