Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30580.Seq
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   6.9  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   9.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.2  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   9.2  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 516 LENSLEMLLVPHPTLE 469
           LEN L+ML++P  TLE
Sbjct: 511 LENILDMLVLPKLTLE 526


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 197  IDSHAKWDNMKHM 235
            I SH+ WD  +HM
Sbjct: 1676 IRSHSTWDPRRHM 1688



 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 522  ADLENSLEMLLVPHPT 475
            A   NSL M + PHPT
Sbjct: 1376 ATTTNSLTMKVRPHPT 1391


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 150 YTILTMLVVSLSINIT 103
           Y + TM++V+LSI IT
Sbjct: 315 YLLFTMILVTLSIWIT 330


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 295 SVPVTTELCSLMLE 254
           S P  T++CS+M+E
Sbjct: 138 SYPHDTQICSMMIE 151


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -3

Query: 242 CISCVSCYPIWHDCLSSRISKL 177
           C   ++ Y +W +CL   + KL
Sbjct: 582 CDPNLAVYGVWINCLDPNLPKL 603


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 117 SINITFIPGPLSXXILVMYILTACITFIL 31
           SI +   PG L   +L M+IL   ++ ++
Sbjct: 92  SITLISFPGELLMRLLKMFILPLIVSSLI 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,923
Number of Sequences: 438
Number of extensions: 3004
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)