Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30580.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77140.1 68414.m08986 vacuolar protein sorting protein 45, pu...    69   2e-12
At4g12120.1 68417.m01924 cytokinesis-related Sec1 protein, putat...    34   0.083
At1g12360.1 68414.m01428 cytokinesis-related Sec1 protein (KEULE...    29   3.1  
At3g11900.1 68416.m01459 amino acid transporter family protein l...    27   7.2  
At1g15510.1 68414.m01866 pentatricopeptide (PPR) repeat-containi...    27   7.2  
At3g19180.1 68416.m02435 cell division protein-related weak simi...    27   9.5  
At2g39570.1 68415.m04854 ACT domain-containing protein contains ...    27   9.5  

>At1g77140.1 68414.m08986 vacuolar protein sorting protein 45,
           putative / VPS45p, putative identical to vacuolar
           protein sorting homolog VPS45p [Arabidopsis thaliana]
           gi|2921406|gb|AAC39472
          Length = 569

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 36/74 (48%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
 Frame = +2

Query: 35  MNVIQAVKMYITKMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDS-HA 211
           M ++ +V+ YI +M      GMKV+++D ET S VS+VYSQSE+LQKEV+L E IDS   
Sbjct: 1   MVLVTSVRDYINRMLQDIS-GMKVLILDSETVSNVSIVYSQSELLQKEVFLVEMIDSISV 59

Query: 212 KWDNMKHMKCIVFI 253
             ++M H+K + FI
Sbjct: 60  SKESMSHLKAVYFI 73



 Score = 63.7 bits (148), Expect = 9e-11
 Identities = 27/71 (38%), Positives = 47/71 (66%)
 Frame = +1

Query: 247 FYTPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDEEXAVREVQEVFADYL 426
           F  PTS+NI  L  +L +P++G Y ++FSN++    I  LA+ DE+  V++VQE +AD++
Sbjct: 72  FIRPTSDNIQKLRYQLANPRFGEYHLFFSNLLKDTQIHILADSDEQEVVQQVQEYYADFV 131

Query: 427 AVDRHLXSFNI 459
           + D +  + N+
Sbjct: 132 SGDPYHFTLNM 142


>At4g12120.1 68417.m01924 cytokinesis-related Sec1 protein, putative
           similar to cytokinesis-related Sec1 protein KEULE
           [Arabidopsis thaliana] gi|12659318|gb|AAK01291; contains
           Pfam domain, PF00995: Sec1 family
          Length = 662

 Score = 33.9 bits (74), Expect = 0.083
 Identities = 21/51 (41%), Positives = 28/51 (54%)
 Frame = +2

Query: 101 KVILMDKETTSIVSMVYSQSEILQKEVYLFERIDSHAKWDNMKHMKCIVFI 253
           KV++MDK T  I+S     SEI Q+ + L E I  H +   M  M+ I FI
Sbjct: 44  KVLVMDKFTVKIMSSACKMSEITQEGISLVEVITKHRQ--PMTAMEVIYFI 92


>At1g12360.1 68414.m01428 cytokinesis-related Sec1 protein (KEULE)
           similar to cytokinesis-related Sec1 protein KEULE
           [Arabidopsis thaliana] gi|12659318|gb|AAK01291; contains
           Pfam domain, PF00995: Sec1 family
          Length = 666

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 247 FYTPTSENIALLSREL--RDPKYGVYFIYFSNVVSK 348
           F  PT EN+ +   ++  + P Y   F++FS+ VSK
Sbjct: 91  FIQPTKENVIMFLSDMSGKSPLYKKAFVFFSSPVSK 126


>At3g11900.1 68416.m01459 amino acid transporter family protein low
           similarity to proton/amino acid transporter 1 [Mus
           musculus] GI:21908024; belongs to INTERPRO:IPR002422
           amino acid/polyamine transporter, family II
          Length = 432

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -2

Query: 153 LYTILTMLVVSLSINITFIPGPLSXXILVMYILTACITFIL 31
           ++T  T+LVV L+   + +PG  +   LV   L A I+F+L
Sbjct: 349 IFTTRTLLVVGLAAIASLVPGFGTFASLVGSTLCALISFVL 389


>At1g15510.1 68414.m01866 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 866

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 9/35 (25%), Positives = 23/35 (65%)
 Frame = +2

Query: 152 SQSEILQKEVYLFERIDSHAKWDNMKHMKCIVFIL 256
           S+S+++++ +  F +++ +    N+KH  C+V +L
Sbjct: 609 SKSQMVRQGLMYFSKMEDYGVTPNLKHYACVVDLL 643


>At3g19180.1 68416.m02435 cell division protein-related weak
           similarity to cell division protein Ftn2 [Synechococcus
           sp. PCC 7942] GI:16226084
          Length = 819

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/72 (19%), Positives = 34/72 (47%)
 Frame = +2

Query: 14  NKDNLIKMNVIQAVKMYITKMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFE 193
           N D++ +  ++  +K+ I  +    G     + +     S  S+ +S SE+ ++ +   E
Sbjct: 633 NLDSVNRNGIVGNIKVLIDMLKMHCGEHPDALYLKSSGQSATSLSHSASELHKRPMDTEE 692

Query: 194 RIDSHAKWDNMK 229
             +   +W+N+K
Sbjct: 693 AEELVRQWENVK 704


>At2g39570.1 68415.m04854 ACT domain-containing protein contains
           Pfam ACT domain PF01842
          Length = 411

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 248 KLCISCVSCYPIWHDCLSSRISKLPSV 168
           +L  +C SC   ++ CL S +SK PS+
Sbjct: 83  RLLSACPSCLGSFYFCLQSNVSKPPSL 109


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,686,827
Number of Sequences: 28952
Number of extensions: 191042
Number of successful extensions: 458
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)