Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30579.Seq
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88311-6|AAB42347.1|  382|Caenorhabditis elegans Hypothetical pr...    34   0.093
AF039711-10|AAB96707.2|  567|Caenorhabditis elegans Yeast prp (s...    34   0.093
U80447-3|AAB37807.2|  910|Caenorhabditis elegans Hypothetical pr...    34   0.12 
Z68315-3|CAA92670.1|  430|Caenorhabditis elegans Hypothetical pr...    33   0.28 
U23412-5|AAK21467.2|  492|Caenorhabditis elegans Hypothetical pr...    31   0.87 
Z78544-3|CAB01760.1|  395|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z37139-8|CAA85487.1|  376|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AL031630-5|CAA20985.1|  915|Caenorhabditis elegans Hypothetical ...    29   4.6  
AF106576-4|AAC78176.1|  473|Caenorhabditis elegans Hypothetical ...    29   4.6  
U42835-5|AAO61444.1|  517|Caenorhabditis elegans Uncoordinated p...    28   6.1  
U42835-4|AAA83588.1|  611|Caenorhabditis elegans Uncoordinated p...    28   6.1  
U28929-5|AAA68348.2|  438|Caenorhabditis elegans Gaba/glycine re...    28   6.1  
AF324437-1|AAK11613.1|  611|Caenorhabditis elegans UNC-78 protein.     28   6.1  
AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin...    28   6.1  
Z81490-1|CAB04014.1|  510|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U80029-14|AAB37593.2|  213|Caenorhabditis elegans Hypothetical p...    28   8.1  
AF330595-1|AAK00353.1|  510|Caenorhabditis elegans SMU-1 protein.      28   8.1  

>U88311-6|AAB42347.1|  382|Caenorhabditis elegans Hypothetical
           protein C10H11.8 protein.
          Length = 382

 Score = 34.3 bits (75), Expect = 0.093
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 5   EAMFSEDGKYYSTITKDGRLKIWDTETN 88
           +A+FS +G+Y  T   D ++KIWD E N
Sbjct: 330 DAIFSSEGRYIFTGGNDNQVKIWDVENN 357


>AF039711-10|AAB96707.2|  567|Caenorhabditis elegans Yeast prp
           (splicing factor) relatedprotein 17 protein.
          Length = 567

 Score = 34.3 bits (75), Expect = 0.093
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +2

Query: 5   EAMFSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLTSPPTCLQW 151
           E  F+ +G  + + + D  +K+WDTET  +KQ +    H    P CL++
Sbjct: 324 EVAFNNEGTEFLSASFDRYVKLWDTETGQVKQRF----HTGHVPYCLKY 368


>U80447-3|AAB37807.2|  910|Caenorhabditis elegans Hypothetical
           protein F55F8.3 protein.
          Length = 910

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 18/55 (32%), Positives = 32/55 (58%)
 Frame = +2

Query: 8   AMFSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLTSPPTCLQWTTVSQSV 172
           A +S DG   +T  +DG++KIW++ ++      T D H TS  T ++WT   +++
Sbjct: 366 AEYSPDGSLMATGAEDGKVKIWNSRSSFC--TVTFDEH-TSGVTAVKWTQSGRAI 417


>Z68315-3|CAA92670.1|  430|Caenorhabditis elegans Hypothetical
           protein F28C6.3 protein.
          Length = 430

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 14  FSEDGKYYSTITKDGRLKIWDTETN 88
           +SE+ + Y T +KDG +KIWD  +N
Sbjct: 267 YSENARLYVTASKDGHVKIWDGVSN 291



 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 8   AMFSEDGKYYSTITKDGRLKIWDTETNVLKQEYT 109
           A F+++GKY  T   D  +K+W+  TN     YT
Sbjct: 309 AKFTKNGKYILTSGMDSIVKLWELSTNRCLIVYT 342


>U23412-5|AAK21467.2|  492|Caenorhabditis elegans Hypothetical
           protein T10F2.4 protein.
          Length = 492

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +2

Query: 14  FSEDGKYYSTITKDGRLKIWD 76
           FSE+G Y +T ++DG +K+WD
Sbjct: 388 FSENGYYLATGSEDGEVKLWD 408


>Z78544-3|CAB01760.1|  395|Caenorhabditis elegans Hypothetical
           protein K04G11.4 protein.
          Length = 395

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
 Frame = +2

Query: 14  FSEDGKYYSTITKDGRLKIWDTET-----NVLKQEYTPDLHLTSPP 136
           F+ DG Y ++ + DG ++IWD+ T      ++ +E+ P  H+   P
Sbjct: 240 FNRDGAYLASGSYDGIVRIWDSTTGTCVKTLIDEEHPPITHVKFSP 285



 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 14  FSEDGKYYSTITKDGRLKIWDTETNVLKQEYT 109
           FS +GKY      +  LK+WD +   + +EYT
Sbjct: 283 FSPNGKYILASNLNNTLKLWDYQKLRVLKEYT 314


>Z37139-8|CAA85487.1|  376|Caenorhabditis elegans Hypothetical
           protein C14B1.4 protein.
          Length = 376

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 14  FSEDGKYYSTITKDGRLKIWDTETNVLKQEYT 109
           FS +GKY      D  LK+WD       ++YT
Sbjct: 264 FSPNGKYILASNLDSTLKLWDFSKGKTLKQYT 295



 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 2   AEAMFSEDGKYYSTITKDGRLKIWDTETNVLKQEYT 109
           + A FS  GKY  T + D  +KIW+ +  + ++  T
Sbjct: 91  SSAKFSPCGKYLGTSSADKTVKIWNMDHMICERTLT 126


>AL031630-5|CAA20985.1|  915|Caenorhabditis elegans Hypothetical
           protein Y38H6C.5 protein.
          Length = 915

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 626 IAVCEVLYPKLLNQCHIFIVKPPKTELI 543
           +++   L+P LL +CH+F V P +T  +
Sbjct: 14  VSLIRGLFPLLLTRCHVFAVCPQQTAFL 41


>AF106576-4|AAC78176.1|  473|Caenorhabditis elegans Hypothetical
           protein W07E6.2 protein.
          Length = 473

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +1

Query: 253 NGKLLIYSISQAKIINVWVPAKHFSAKVTALDWSRKYGLYSCTKDSRVYEWNIEDG 420
           +G + I+   Q  ++     + H +A VT L W  +  +YS ++D  V  W  +DG
Sbjct: 216 DGNIFIWDTVQGTVVRCL--SGH-TASVTCLRWGGEGLIYSGSQDRTVKMWRADDG 268


>U42835-5|AAO61444.1|  517|Caenorhabditis elegans Uncoordinated
           protein 78, isoform b protein.
          Length = 517

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 17  SEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLT 127
           S DGK   +   +G +  WD  T +  + + PD+H T
Sbjct: 333 SADGKTLFSADAEGHINSWDISTGISNRVF-PDVHAT 368


>U42835-4|AAA83588.1|  611|Caenorhabditis elegans Uncoordinated
           protein 78, isoform a protein.
          Length = 611

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 17  SEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLT 127
           S DGK   +   +G +  WD  T +  + + PD+H T
Sbjct: 333 SADGKTLFSADAEGHINSWDISTGISNRVF-PDVHAT 368


>U28929-5|AAA68348.2|  438|Caenorhabditis elegans Gaba/glycine
           receptor family (seegbr) protein 3 protein.
          Length = 438

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 370 YSCTKDSRVYEWNIEDGSVKQTYNISIENN 459
           YSCT       +NI +   ++ YNIS E N
Sbjct: 370 YSCTSKCNSVRYNINNNDDEELYNISGETN 399


>AF324437-1|AAK11613.1|  611|Caenorhabditis elegans UNC-78 protein.
          Length = 611

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 17  SEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLT 127
           S DGK   +   +G +  WD  T +  + + PD+H T
Sbjct: 333 SADGKTLFSADAEGHINSWDISTGISNRVF-PDVHAT 368


>AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin
            related protein 2 protein.
          Length = 1335

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 2    AEAMFSEDGKYYSTI-TKDGRLKIWDTETNVL 94
            A   FSEDGKY +T   +DG++  + T  + L
Sbjct: 1249 AAVAFSEDGKYLATYGAEDGKINFFQTSQSFL 1280


>Z81490-1|CAB04014.1|  510|Caenorhabditis elegans Hypothetical
           protein CC4.3 protein.
          Length = 510

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 14  FSEDGKYYSTITKDGRLKIWDTET 85
           FS D +  +T + DG++K+W  ET
Sbjct: 272 FSRDSEMLATGSIDGKIKVWKVET 295


>U80029-14|AAB37593.2|  213|Caenorhabditis elegans Hypothetical
           protein T20D4.4 protein.
          Length = 213

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/43 (25%), Positives = 26/43 (60%)
 Frame = +1

Query: 367 LYSCTKDSRVYEWNIEDGSVKQTYNISIENNTKQGSNINAIKI 495
           L++ + D+R ++ ++EDG   +++++ +   +KQ  N   I I
Sbjct: 171 LWTISLDARAFKADLEDGINSESFSVEVFWKSKQDHNQTTISI 213


>AF330595-1|AAK00353.1|  510|Caenorhabditis elegans SMU-1 protein.
          Length = 510

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 14  FSEDGKYYSTITKDGRLKIWDTET 85
           FS D +  +T + DG++K+W  ET
Sbjct: 272 FSRDSEMLATGSIDGKIKVWKVET 295


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,227,049
Number of Sequences: 27780
Number of extensions: 360337
Number of successful extensions: 999
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)