Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30579.Seq
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    24   1.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.3  

>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +1

Query: 154 NRQSISFELKREPKQFKCEYKRK*VPMHSIRHYNGKLLIYSISQAKIINVWVP 312
           +R  +  E  +EPK       +     ++  +YN K L Y+I+  + I V VP
Sbjct: 289 SRDRMERERSKEPKIISSLSNKTIHNNNNYNNYNNKKLYYNINYIEQIPVPVP 341


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +2

Query: 308 CPPNILALK*PPWIGVENTVCTAVLRTV 391
           C P + A     W+G  N+    V+ TV
Sbjct: 652 CQPGVTAFIVTSWLGYMNSFVNPVIYTV 679


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 427  KQTYNISIENNTKQGSNINAIKIIP 501
            +Q +N  + NN K G N   + ++P
Sbjct: 1503 QQEWN-QVSNNVKPGGNFVVLDLVP 1526


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,368
Number of Sequences: 438
Number of extensions: 4418
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)