Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30579.Seq
(748 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g04940.1 68417.m00718 transducin family protein / WD-40 repea... 33 0.27
At2g37160.1 68415.m04559 transducin family protein / WD-40 repea... 31 0.61
At2g38020.1 68415.m04667 vacuoleless1 (VCL1) contains Pfam profi... 31 0.81
At4g21970.1 68417.m03180 expressed protein contains Pfam profile... 31 1.1
At1g73720.1 68414.m08536 transducin family protein / WD-40 repea... 31 1.1
At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 ... 30 1.4
At5g11240.1 68418.m01313 transducin family protein / WD-40 repea... 29 2.5
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf... 29 2.5
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 29 2.5
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 29 2.5
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea... 29 2.5
At5g64730.1 68418.m08140 transducin family protein / WD-40 repea... 29 3.3
At5g14050.1 68418.m01644 transducin family protein / WD-40 repea... 29 3.3
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 29 3.3
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 29 3.3
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 29 3.3
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 29 3.3
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 29 3.3
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 29 4.3
At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5 ... 29 4.3
At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic regul... 28 5.7
At4g14310.2 68417.m02205 peroxisomal membrane protein-related co... 28 5.7
At4g14310.1 68417.m02204 peroxisomal membrane protein-related co... 28 5.7
At3g53390.1 68416.m05892 transducin family protein / WD-40 repea... 28 5.7
At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic regul... 28 5.7
At2g12400.1 68415.m01339 expressed protein 28 5.7
At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10... 28 7.6
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ... 28 7.6
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ... 28 7.6
At1g18830.1 68414.m02345 transducin family protein / WD-40 repea... 28 7.6
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10... 28 7.6
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10... 28 7.6
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea... 27 10.0
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 27 10.0
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 27 10.0
At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pf... 27 10.0
At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pf... 27 10.0
At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6 ... 27 10.0
>At4g04940.1 68417.m00718 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats
Length = 910
Score = 32.7 bits (71), Expect = 0.27
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLTSPPTCL 145
FSEDGK+ + + DG L+IWD V+ + +H+ P T L
Sbjct: 565 FSEDGKWVISSSMDGSLRIWD----VILAKQIDGVHVDVPITAL 604
>At2g37160.1 68415.m04559 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to Dystrophia myotonica-containing WD repeat
motif protein DMR-N9 protein (DMWD) (DM9) (SP:Q08274)
[Mus musculus]; simlar to DMR protein GI:18028289 [Homo
sapiens];
Length = 544
Score = 31.5 bits (68), Expect = 0.61
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVL 94
FS DG Y +T+ +DG L+I+D T L
Sbjct: 311 FSNDGAYLATVGRDGYLRIFDFSTQKL 337
>At2g38020.1 68415.m04667 vacuoleless1 (VCL1) contains Pfam
profiles: PF04841 Vps16, N-terminal region, PF04840:
Vps16, C-terminal region; identical to cDNA VCL1 (VCL1)
GI:13877132
Length = 858
Score = 31.1 bits (67), Expect = 0.81
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 17 SEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLTSPPTCLQW 151
S +GK+ + T DGR+ + D ET + +Y+ + L PP + W
Sbjct: 249 SPNGKFLTLFTHDGRIVVVDMETKQIAIDYSCESAL--PPQQMAW 291
>At4g21970.1 68417.m03180 expressed protein contains Pfam profile
PF04520: Protein of unknown function, DUF584; expression
supported by MPSS
Length = 181
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 313 AKHFSAKVTALDWSRKYGLYSCTKDSRVYEWNIED 417
AK SA + DWS+ YG S ++ W I+D
Sbjct: 56 AKQSSAPMNIPDWSKVYGYSKKNTSSHLHSWAIDD 90
>At1g73720.1 68414.m08536 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Will die slowly protein
(SP:Q9V3J8)[Drosophila melanogaster]
Length = 511
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 8 AMFSEDGKYYSTITKDGRLKIWDTETNVLKQEYTP 112
A+F+ DG T + D +K+WD++T Q + P
Sbjct: 353 AIFTSDGSRIITASSDCTVKVWDSKTTDCLQTFKP 387
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +2
Query: 8 AMFSEDGKYYSTITKDGRLKIWDTETNVLKQE 103
A FS DG++ ++ + DG +++WD + LK++
Sbjct: 219 ARFSPDGQFLASSSVDGFIEVWDYISGKLKKD 250
>At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8
WD-40 repeats (PF00400) (2 weak)
Length = 1108
Score = 30.3 bits (65), Expect = 1.4
Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Frame = +1
Query: 148 VDNRQSISFELKREPKQFKCEYKRK*VPMHSIRHYNGKLLIYSISQ-AKIINVWVPAKHF 324
V R+ +FE P C + ++ + +GK+ + ++ P K
Sbjct: 483 VSGRKHFTFEGHDAPVYSICPHYKENIQFIFSTAIDGKIKAWLYDNLGSRVDYDAPGKWC 542
Query: 325 SAKVTALDWSRKYGL-YSCTKDSRVYEWNIEDGSVKQTY 438
+ + + D +R + S DS + EWN +GS+K+TY
Sbjct: 543 TRMLYSADGTRLFSCGTSKDGDSFLVEWNESEGSIKRTY 581
>At5g11240.1 68418.m01313 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
similar to uncharacterized protein KIAA0007 (GI:1663708)
{Homo sapiens} 1.2e-11
Length = 615
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVLKQEY 106
FS Y + T DGR+KIWDT ++ E+
Sbjct: 13 FSPALDYLALSTGDGRIKIWDTVKGQVQTEF 43
>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]; similar to rab11 binding protein GI:4512103
from [Bos taurus]
Length = 593
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIW 73
FS DGKY +T +DG +KIW
Sbjct: 206 FSPDGKYLATGGEDGVVKIW 225
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVL 94
F DGK ++ T DG++ WDT VL
Sbjct: 527 FRPDGKQLASSTLDGQINFWDTIEGVL 553
Score = 27.5 bits (58), Expect = 10.0
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Frame = +2
Query: 8 AMFSEDGKYYST-ITKDGRLKIWD--TETNVLKQE 103
A+F+E G + + K G+L +WD TET +LKQ+
Sbjct: 312 AVFNERGNWLTFGCAKLGQLLVWDWRTETYILKQQ 346
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVL 94
F DGK ++ T DG++ WDT VL
Sbjct: 567 FRPDGKQLASSTLDGQINFWDTIEGVL 593
Score = 27.5 bits (58), Expect = 10.0
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Frame = +2
Query: 8 AMFSEDGKYYST-ITKDGRLKIWD--TETNVLKQE 103
A+F+E G + + K G+L +WD TET +LKQ+
Sbjct: 352 AVFNERGNWLTFGCAKLGQLLVWDWRTETYILKQQ 386
>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
family protein similar to splicing factor hPRP17
(gi|3283220); contains 7 WD-40 repeats (PF00400);similar
to ESTs emb|F15435 and dbj|AUO62661
Length = 573
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTET 85
FS DG + T D +K WDTET
Sbjct: 334 FSNDGSKFLTAGYDKNIKYWDTET 357
>At5g64730.1 68418.m08140 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Will die slowly protein (SP:Q9V3J8) [Fruit
fly] {Drosophila m.]
Length = 299
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Frame = +2
Query: 8 AMFSEDGKYYSTITKDGRLKIWDTETNVLKQEY------TPDLHLTS 130
A F+ DG Y T KD +++W+ +L + Y D+H+TS
Sbjct: 24 ARFNGDGNYALTCGKDRTIRLWNPHRGILIKTYKSHGREVRDVHVTS 70
>At5g14050.1 68418.m01644 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to unknown protein (ref|NP_057085.1)
Length = 546
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTET 85
FSEDGK+ + DG++ +WD T
Sbjct: 382 FSEDGKHLLSSGGDGQVYVWDLRT 405
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLH 121
FS DGK ++ D ++ IW+ ET L+ E TP+ H
Sbjct: 516 FSYDGKLLASAGHDKKVFIWNMET--LQVESTPEEH 549
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLH 121
FS DGK ++ D ++ IW+ ET L+ E TP+ H
Sbjct: 518 FSYDGKLLASAGHDKKVFIWNMET--LQVESTPEEH 551
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLH 121
FS DGK ++ D ++ IW+ ET L+ E TP+ H
Sbjct: 518 FSYDGKLLASAGHDKKVFIWNMET--LQVESTPEEH 551
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLH 121
FS DGK ++ D ++ IW+ ET L+ E TP+ H
Sbjct: 518 FSYDGKLLASAGHDKKVFIWNMET--LQVESTPEEH 551
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLH 121
FS DGK ++ D ++ IW+ ET L+ E TP+ H
Sbjct: 518 FSYDGKLLASAGHDKKVFIWNMET--LQVESTPEEH 551
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 5 EAMFSEDGKYYSTITKDGRLKIWDTETNVLKQE 103
+ +S D + + +KD LKIW+ T LKQ+
Sbjct: 407 QVSWSADSRLLLSGSKDSTLKIWEIRTKKLKQD 439
>At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI2 (SP:O22468) [Arabidopsis thaliana] WD-40
repeats (PF0400);
Length = 415
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 35 YSTITKDGRLKIWDTETNVLKQE 103
+ + +DGRL IWDT TN ++ +
Sbjct: 233 FGSAGEDGRLVIWDTRTNQMQHQ 255
>At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic
regulator 1 (PRL1) identical to PP1/PP2A phosphatases
pleiotropic regulator PRL1 (SP:Q42384) [Arabidopsis
thaliana], PRL1 [Arabidopsis thaliana] GI:577733;
contains Pfam PF00400: WD domain, G-beta repeat (7
copies)
Length = 486
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYT 109
F +++ T + D +KIWD T VLK T
Sbjct: 184 FDPSNEWFCTGSADRTIKIWDVATGVLKLTLT 215
>At4g14310.2 68417.m02205 peroxisomal membrane protein-related
contains weak similarity to Peroxisomal membrane protein
2 (22 kDa peroxisomal membrane protein)
(Swiss-Prot:P42925) [Mus musculus]
Length = 965
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +1
Query: 379 TKDSRVYEWNIEDGS--VKQTYNISIENNTKQGSNINAIKIIPHNR 510
TKD + +IEDGS V +T + NNT G N A ++P +
Sbjct: 634 TKDIKAL--HIEDGSSRVSRTALAPLPNNTSHGRNTPACAVVPETQ 677
>At4g14310.1 68417.m02204 peroxisomal membrane protein-related
contains weak similarity to Peroxisomal membrane protein
2 (22 kDa peroxisomal membrane protein)
(Swiss-Prot:P42925) [Mus musculus]
Length = 1087
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +1
Query: 379 TKDSRVYEWNIEDGS--VKQTYNISIENNTKQGSNINAIKIIPHNR 510
TKD + +IEDGS V +T + NNT G N A ++P +
Sbjct: 607 TKDIKAL--HIEDGSSRVSRTALAPLPNNTSHGRNTPACAVVPETQ 650
>At3g53390.1 68416.m05892 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Dystrophia myotonica-containing WD repeat
motif protein DMR-N9 protein (DMWD) (DM9) (SP:Q08274)
[Mus musculus]; simlar to DMR protein GI:18028289 [Homo
sapiens];
Length = 558
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVL 94
FS DG + +T+ +DG L+I+D T L
Sbjct: 311 FSNDGAHLATVGRDGYLRIFDFLTQKL 337
>At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic
regulator 2 (PRL2) identical to SP|Q39190 PP1/PP2A
phosphatases pleiotropic regulator PRL2 {Arabidopsis
thaliana}, GB:Q39190 from [Arabidopsis thaliana];
contains Pfam PF00400: WD domain, G-beta repeat (7
copies, 1 weak)
Length = 479
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYT 109
F +++ T + D +KIWD T VLK T
Sbjct: 178 FDPSNEWFCTGSADRTIKIWDVATGVLKLTLT 209
>At2g12400.1 68415.m01339 expressed protein
Length = 541
Score = 28.3 bits (60), Expect = 5.7
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +1
Query: 406 NIEDGSVKQTYNIS-IENNTKQGSNINAIKIIPHNRTRNPGT**LHHISSVFGGFTIKM* 582
N E+ V++ + S IE + S N+ I+ RTR + GG+ I
Sbjct: 36 NEEERGVEEEWRTSVIERVIAEESGENSSLILAAKRTRRKDP--ADNFKLYTGGWNISNS 93
Query: 583 H*FKSLGYSTSQTAILSLVSF 645
H S+GY+ + I++LV F
Sbjct: 94 HYLTSVGYTAAPFIIIALVWF 114
>At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/99 (19%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Frame = +1
Query: 148 VDNRQSISFELKREPKQFKCEYKRK*VPMHSIRHYNGKLLIYSISQA-KIINVWVPAKHF 324
+ ++ +FE P C ++++ + +GK+ + ++ P +
Sbjct: 484 LSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSRVDYDAPGQWC 543
Query: 325 SAKVTALDWSRKYGLYSCTK-DSRVYEWNIEDGSVKQTY 438
+ + + D SR + + + DS + EWN +G++K+TY
Sbjct: 544 TTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTY 582
>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 4/28 (14%)
Frame = +1
Query: 367 LYSC--TKD--SRVYEWNIEDGSVKQTY 438
L+SC +KD S + EWN +G+VK+TY
Sbjct: 565 LFSCGTSKDGESFIVEWNESEGAVKRTY 592
>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 4/28 (14%)
Frame = +1
Query: 367 LYSC--TKD--SRVYEWNIEDGSVKQTY 438
L+SC +KD S + EWN +G+VK+TY
Sbjct: 565 LFSCGTSKDGESFIVEWNESEGAVKRTY 592
>At1g18830.1 68414.m02345 transducin family protein / WD-40 repeat
family protein similar to Sec31p (GI:13928450) {Oryza
sativa}
Length = 969
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +1
Query: 334 VTALDWSRKYGLY--SCTKDSRVYEWNIEDGSV 426
V A++W LY +C KD+R WN + G +
Sbjct: 255 VIAMEWCPSDSLYLLTCGKDNRTICWNTKTGKI 287
>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 4/28 (14%)
Frame = +1
Query: 367 LYSC--TKD--SRVYEWNIEDGSVKQTY 438
L+SC +KD S + EWN +G+VK+TY
Sbjct: 565 LFSCGTSKDGESFIVEWNESEGAVKRTY 592
>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 4/28 (14%)
Frame = +1
Query: 367 LYSC--TKD--SRVYEWNIEDGSVKQTY 438
L+SC +KD S + EWN +G+VK+TY
Sbjct: 565 LFSCGTSKDGESFIVEWNESEGAVKRTY 592
>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 523
Score = 27.5 bits (58), Expect = 10.0
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDT-ETNVLKQEYTPDLHLTSPPTCLQWT 154
FS GKY +T + D IW + N ++ ++T + H +P + + W+
Sbjct: 232 FSNSGKYLATASSDCTAIIWKVLDDNKVELKHTLESH-QNPVSFVSWS 278
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 27.5 bits (58), Expect = 10.0
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIW 73
FS DG+Y ++ +DG L++W
Sbjct: 259 FSPDGRYLASAGEDGVLRVW 278
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 27.5 bits (58), Expect = 10.0
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIW 73
FS DG+Y ++ +DG L++W
Sbjct: 259 FSPDGRYLASAGEDGVLRVW 278
>At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1135
Score = 27.5 bits (58), Expect = 10.0
Identities = 18/92 (19%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Frame = +1
Query: 169 SFELKREPKQFKCEYKRK*VPMHSIRHYNGKLLIYSI-SQAKIINVWVPAKHFSAKVTAL 345
+FE P C ++++ + +GK+ + + ++ P + ++
Sbjct: 503 TFEGHEAPVYSVCPHQKENIQFIFSTAVDGKIKAWLYDNMGSRVDYDAPGRSCTSMAYCA 562
Query: 346 DWSRKYGLYSCTK-DSRVYEWNIEDGSVKQTY 438
D +R + + + +S + EWN +G+VK+TY
Sbjct: 563 DGTRLFSCGTSKEGESFIVEWNESEGAVKRTY 594
>At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1137
Score = 27.5 bits (58), Expect = 10.0
Identities = 18/92 (19%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Frame = +1
Query: 169 SFELKREPKQFKCEYKRK*VPMHSIRHYNGKLLIYSI-SQAKIINVWVPAKHFSAKVTAL 345
+FE P C ++++ + +GK+ + + ++ P + ++
Sbjct: 503 TFEGHEAPVYSVCPHQKENIQFIFSTAVDGKIKAWLYDNMGSRVDYDAPGRSCTSMAYCA 562
Query: 346 DWSRKYGLYSCTK-DSRVYEWNIEDGSVKQTY 438
D +R + + + +S + EWN +G+VK+TY
Sbjct: 563 DGTRLFSCGTSKEGESFIVEWNESEGAVKRTY 594
>At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similiar to rab11 binding
protein (GI:4512103) [Bos taurus]
Length = 903
Score = 27.5 bits (58), Expect = 10.0
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = +2
Query: 8 AMFSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLH 121
A +S+DGKY ++D ++ +W + + + T H
Sbjct: 688 ASYSQDGKYIICASEDSQVYLWKNDFHRTRSTLTTQSH 725
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,922,880
Number of Sequences: 28952
Number of extensions: 326565
Number of successful extensions: 943
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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