Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30578.Seq
         (533 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    23   1.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.2  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   5.2  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   9.0  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   9.0  

>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 125 PFRWCISRKGHRPRES 172
           PF+W   +K  R RES
Sbjct: 323 PFKWLFKKKKRRNRES 338


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 331 GHAVGDIPGVR 363
           G AVGD+PG+R
Sbjct: 62  GTAVGDVPGLR 72


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = -2

Query: 445 CTPMILVAPFSLCRERGET 389
           C P + V P   C E G T
Sbjct: 163 CDPAVCVLPDCFCSEDGTT 181


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 363 TNSGNVTDGVTFTTESRH*YSSFSSMWFRQPSR 265
           TN+  +T   +  TES   Y+SF   +  + S+
Sbjct: 458 TNNAIMTPPASVQTESSDNYNSFHQFYSSESSQ 490


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 363 TNSGNVTDGVTFTTESRH*YSSFSSMWFRQPSR 265
           TN+  +T   +  TES   Y+SF   +  + S+
Sbjct: 406 TNNAIMTPPASVQTESSDNYNSFHQFYSSESSQ 438


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,787
Number of Sequences: 336
Number of extensions: 3025
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12992348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)