Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30578.Seq
(533 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 117 7e-27
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 117 7e-27
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 113 1e-25
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 44 1e-04
04_01_0440 + 5746474-5746662,5746895-5747251 28 4.1
08_01_0401 - 3569545-3570003 28 5.4
03_01_0309 - 2432395-2433271,2433494-2434495,2434538-2435073,243... 27 7.2
01_06_0595 - 30485460-30486097,30486721-30487179,30487339-304875... 27 7.2
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 117 bits (281), Expect = 7e-27
Identities = 50/65 (76%), Positives = 58/65 (89%)
Frame = +3
Query: 54 HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 233
HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+
Sbjct: 16 HRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLV 74
Query: 234 KNGKK 248
KNGKK
Sbjct: 75 KNGKK 79
Score = 82.2 bits (194), Expect = 2e-16
Identities = 37/42 (88%), Positives = 41/42 (97%)
Frame = +1
Query: 310 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 435
+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 101 IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
Score = 35.9 bits (79), Expect = 0.021
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +2
Query: 242 KESDPFVPRDGCLNHIEENDE 304
K+ FVP DGCLN IEENDE
Sbjct: 78 KKIAAFVPNDGCLNFIEENDE 98
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 117 bits (281), Expect = 7e-27
Identities = 50/65 (76%), Positives = 58/65 (89%)
Frame = +3
Query: 54 HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 233
HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+
Sbjct: 16 HRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLV 74
Query: 234 KNGKK 248
KNGKK
Sbjct: 75 KNGKK 79
Score = 117 bits (281), Expect = 7e-27
Identities = 50/65 (76%), Positives = 58/65 (89%)
Frame = +3
Query: 54 HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 233
HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+
Sbjct: 186 HRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLV 244
Query: 234 KNGKK 248
KNGKK
Sbjct: 245 KNGKK 249
Score = 82.2 bits (194), Expect = 2e-16
Identities = 37/42 (88%), Positives = 41/42 (97%)
Frame = +1
Query: 310 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 435
+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 271 IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 312
Score = 78.6 bits (185), Expect = 3e-15
Identities = 35/40 (87%), Positives = 39/40 (97%)
Frame = +1
Query: 310 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERP 429
+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+P
Sbjct: 101 IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 140
Score = 35.9 bits (79), Expect = 0.021
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +2
Query: 242 KESDPFVPRDGCLNHIEENDE 304
K+ FVP DGCLN IEENDE
Sbjct: 78 KKIAAFVPNDGCLNFIEENDE 98
Score = 35.9 bits (79), Expect = 0.021
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +2
Query: 242 KESDPFVPRDGCLNHIEENDE 304
K+ FVP DGCLN IEENDE
Sbjct: 248 KKIAAFVPNDGCLNFIEENDE 268
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 113 bits (271), Expect = 1e-25
Identities = 49/65 (75%), Positives = 56/65 (86%)
Frame = +3
Query: 54 HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 233
HRR QRWADK +KK+H G +WK PF G+SHAKGIVLEK+G+EAKQPNSAI KC RVQL+
Sbjct: 87 HRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAICKCARVQLV 145
Query: 234 KNGKK 248
KNGKK
Sbjct: 146 KNGKK 150
Score = 30.7 bits (66), Expect = 0.77
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 242 KESDPFVPRDGCLNHIEEND 301
K+ FVP DGCLN I+EN+
Sbjct: 149 KKIAAFVPNDGCLNFIKENE 168
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = +1
Query: 310 VAGFGRKGHAVGDIPGVRFKVVK 378
++GFG KGHAVGDI GVRF+VVK
Sbjct: 71 ISGFGHKGHAVGDIRGVRFEVVK 93
>04_01_0440 + 5746474-5746662,5746895-5747251
Length = 181
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 68 AMGGQRIQESPHGYEMEG*PFRWCI-SRKGHRPR 166
A+GG P GY+ +G PF C KG+ PR
Sbjct: 126 AIGGMPAIAVPAGYDNQGVPFAICFGGLKGYEPR 159
>08_01_0401 - 3569545-3570003
Length = 152
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/66 (25%), Positives = 24/66 (36%)
Frame = +3
Query: 18 TPRNTNGA*HVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPN 197
TP+ T G +H R + A E ++ W A P KGI + +
Sbjct: 78 TPKFTGGVLGASHMRVEAAAVAELREWEKTRSWIAGPAEDRRRRKGIAMVATTAREDEGV 137
Query: 198 SAIRKC 215
S R C
Sbjct: 138 SGRRNC 143
>03_01_0309 -
2432395-2433271,2433494-2434495,2434538-2435073,
2435579-2435716,2436050-2436148,2436278-2436346,
2436968-2437063
Length = 938
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Frame = -2
Query: 466 TAGHLSQCTPMILVAPFSLCRERGET----RWLLLPP*NELRECHRRRDLYDRI 317
T GH+++ P+ L LCR E + ++ P E E H+ DL I
Sbjct: 138 TTGHVAKAAPVFLDETIKLCRVYSEAAKSDQCIMSMPKEETTEEHKETDLTSNI 191
>01_06_0595 -
30485460-30486097,30486721-30487179,30487339-30487558,
30488229-30489980
Length = 1022
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -1
Query: 284 GLGNRHGGRMGHFLSVLNELYTDAFADGRVG 192
G+G + G +G F + +E+ +D ++GR G
Sbjct: 306 GIGGSYSGELGIFSNQTSEMESDLLSEGRSG 336
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,142,117
Number of Sequences: 37544
Number of extensions: 361452
Number of successful extensions: 795
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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