Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30578.Seq
(533 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0) 126 9e-30
SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0) 85 5e-17
SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042) 29 2.4
SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13) 28 4.2
SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12) 27 7.3
SB_3221| Best HMM Match : rve (HMM E-Value=3) 27 7.3
SB_44265| Best HMM Match : DUF1032 (HMM E-Value=4e-06) 27 9.6
SB_32242| Best HMM Match : Pam16 (HMM E-Value=7.4e-20) 27 9.6
>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
Length = 413
Score = 126 bits (305), Expect = 9e-30
Identities = 57/66 (86%), Positives = 62/66 (93%)
Frame = +3
Query: 51 NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 230
+HRR+Q+W DK +KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL
Sbjct: 14 SHRRDQKWHDKAYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 73
Query: 231 IKNGKK 248
IKNGKK
Sbjct: 74 IKNGKK 79
Score = 37.5 bits (83), Expect = 0.007
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +2
Query: 242 KESDPFVPRDGCLNHIEENDE 304
K+ FVP DGCLN+IEENDE
Sbjct: 78 KKITAFVPNDGCLNYIEENDE 98
Score = 37.5 bits (83), Expect = 0.007
Identities = 13/17 (76%), Positives = 17/17 (100%)
Frame = +1
Query: 310 VAGFGRKGHAVGDIPGV 360
++GFGR+GHAVGDIPG+
Sbjct: 101 ISGFGRRGHAVGDIPGI 117
>SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
Length = 143
Score = 84.6 bits (200), Expect = 5e-17
Identities = 38/42 (90%), Positives = 42/42 (100%)
Frame = +1
Query: 310 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 435
++GFGR+GHAVGDIPGVRFKVVKVANVSLLAL+KEKKERPRS
Sbjct: 102 ISGFGRRGHAVGDIPGVRFKVVKVANVSLLALFKEKKERPRS 143
Score = 55.2 bits (127), Expect = 3e-08
Identities = 25/28 (89%), Positives = 27/28 (96%)
Frame = +3
Query: 165 EKVGVEAKQPNSAIRKCVRVQLIKNGKK 248
++ GVEAKQPNSAIRKCVRVQLIKNGKK
Sbjct: 53 QEPGVEAKQPNSAIRKCVRVQLIKNGKK 80
Score = 37.5 bits (83), Expect = 0.007
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +2
Query: 242 KESDPFVPRDGCLNHIEENDE 304
K+ FVP DGCLN+IEENDE
Sbjct: 79 KKITAFVPNDGCLNYIEENDE 99
>SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042)
Length = 623
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +2
Query: 401 LSTKRKRSDQDHRCTL**VTCCREARCL*VHKM*NPVHNKYCVQ 532
+S+KR RS+ + C V CC E V K +PV K CV+
Sbjct: 1 MSSKRTRSESSNLC----VVCCEEIEFSAVGKCDHPVCYKCCVR 40
>SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 468
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 95 SPHGYEMEG*PFRWCISRKGHRPRESWCRS*AA 193
S HG MEG P W +S G P+ S C S +A
Sbjct: 85 SQHGTRMEGVPVCWYVSVWGLSPQVSQCDSVSA 117
>SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 694
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +2
Query: 401 LSTKRKRSDQDHRCTL**VTCCREARCL*VHKM*NPVHNKYCVQ 532
+S+KR RS+ + C V CC E V K +PV K CV+
Sbjct: 1 MSSKRTRSESSNLC----VVCCEEIEFSAVGKCDHPVCYKCCVR 40
>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
Length = 943
Score = 28.3 bits (60), Expect = 4.2
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = -2
Query: 163 RTMPFA*D-APPKGLAFHFVPMW-AFLN-SLSAHR 68
R +PF+ APPKG F VP+W +F N S+ HR
Sbjct: 902 RKVPFSSVLAPPKGYRFLIVPLWRSFSNRSVFGHR 936
>SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)
Length = 302
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +3
Query: 150 KGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGK 245
KG+ ++ + K+PNSA RKC ++L NGK
Sbjct: 230 KGVCVKVFIRKPKKPNSAQRKCALLKL-SNGK 260
>SB_3221| Best HMM Match : rve (HMM E-Value=3)
Length = 324
Score = 27.5 bits (58), Expect = 7.3
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -1
Query: 458 SLITMYTYDLGRSFFSL*RARRDTLATFTTLKRTPGMSPTA*PLRP 321
S T TYDL SF+S+ + + LAT +K++P + + L+P
Sbjct: 9 SFDTFPTYDLA-SFYSVLCSGDEQLATIKLMKKSPSLFQKSHTLKP 53
>SB_44265| Best HMM Match : DUF1032 (HMM E-Value=4e-06)
Length = 1073
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -1
Query: 266 GGRMGHFLSVLNELYTDAFADGRVGLLSFYTN 171
G MGHFL L ++Y D D V LL F N
Sbjct: 872 GNWMGHFLDNLQDIYRDT-NDKHVSLLVFDYN 902
>SB_32242| Best HMM Match : Pam16 (HMM E-Value=7.4e-20)
Length = 255
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +1
Query: 76 RTKNSRKPTWVRNGRLTLSVVHLT 147
R N++KP +R+GR+T+S+ +T
Sbjct: 110 RDTNTKKPVHLRDGRVTVSLAAMT 133
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,394,484
Number of Sequences: 59808
Number of extensions: 416029
Number of successful extensions: 718
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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