Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30578.Seq
(533 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S... 128 2e-29
CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein. 128 2e-29
BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23 p... 128 2e-29
AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23 p... 85 2e-16
Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal p... 35 0.16
CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein. 35 0.16
BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal... 35 0.16
BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal... 35 0.16
BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal... 35 0.16
AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12 p... 35 0.16
AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein. 30 5.9
>D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S28
homologue protein.
Length = 143
Score = 128 bits (308), Expect = 2e-29
Identities = 57/66 (86%), Positives = 63/66 (95%)
Frame = +3
Query: 51 NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 230
+HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL
Sbjct: 15 SHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 74
Query: 231 IKNGKK 248
IKNGKK
Sbjct: 75 IKNGKK 80
Score = 86.2 bits (204), Expect = 6e-17
Identities = 41/42 (97%), Positives = 41/42 (97%)
Frame = +1
Query: 310 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 435
VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPRS
Sbjct: 102 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
Score = 36.3 bits (80), Expect = 0.068
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +2
Query: 242 KESDPFVPRDGCLNHIEENDE 304
K+ FVP DGCLN IEENDE
Sbjct: 79 KKITAFVPNDGCLNFIEENDE 99
>CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein.
Length = 143
Score = 128 bits (308), Expect = 2e-29
Identities = 57/66 (86%), Positives = 63/66 (95%)
Frame = +3
Query: 51 NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 230
+HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL
Sbjct: 15 SHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 74
Query: 231 IKNGKK 248
IKNGKK
Sbjct: 75 IKNGKK 80
Score = 86.2 bits (204), Expect = 6e-17
Identities = 41/42 (97%), Positives = 41/42 (97%)
Frame = +1
Query: 310 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 435
VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPRS
Sbjct: 102 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
Score = 36.3 bits (80), Expect = 0.068
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +2
Query: 242 KESDPFVPRDGCLNHIEENDE 304
K+ FVP DGCLN IEENDE
Sbjct: 79 KKITAFVPNDGCLNFIEENDE 99
>BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23
protein.
Length = 143
Score = 128 bits (308), Expect = 2e-29
Identities = 57/66 (86%), Positives = 63/66 (95%)
Frame = +3
Query: 51 NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 230
+HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL
Sbjct: 15 SHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 74
Query: 231 IKNGKK 248
IKNGKK
Sbjct: 75 IKNGKK 80
Score = 86.2 bits (204), Expect = 6e-17
Identities = 41/42 (97%), Positives = 41/42 (97%)
Frame = +1
Query: 310 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 435
VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPRS
Sbjct: 102 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
Score = 36.3 bits (80), Expect = 0.068
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +2
Query: 242 KESDPFVPRDGCLNHIEENDE 304
K+ FVP DGCLN IEENDE
Sbjct: 79 KKITAFVPNDGCLNFIEENDE 99
>AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23
protein.
Length = 59
Score = 84.6 bits (200), Expect = 2e-16
Identities = 40/41 (97%), Positives = 40/41 (97%)
Frame = +1
Query: 310 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPR 432
VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPR
Sbjct: 19 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPR 59
Score = 35.5 bits (78), Expect = 0.12
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = +2
Query: 257 FVPRDGCLNHIEENDE 304
FVP DGCLN IEENDE
Sbjct: 1 FVPNDGCLNFIEENDE 16
>Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 precursor protein.
Length = 138
Score = 35.1 bits (77), Expect = 0.16
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +3
Query: 117 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 230
K P G KG+VL + K+PNSA RKC RV+L
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85
>CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein.
Length = 138
Score = 35.1 bits (77), Expect = 0.16
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +3
Query: 117 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 230
K P G KG+VL + K+PNSA RKC RV+L
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85
>BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 35.1 bits (77), Expect = 0.16
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +3
Query: 117 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 230
K P G KG+VL + K+PNSA RKC RV+L
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85
>BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 35.1 bits (77), Expect = 0.16
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +3
Query: 117 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 230
K P G KG+VL + K+PNSA RKC RV+L
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85
>BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 35.1 bits (77), Expect = 0.16
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +3
Query: 117 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 230
K P G KG+VL + K+PNSA RKC RV+L
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85
>AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12
protein.
Length = 138
Score = 35.1 bits (77), Expect = 0.16
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +3
Query: 117 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 230
K P G KG+VL + K+PNSA RKC RV+L
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85
>AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein.
Length = 1332
Score = 29.9 bits (64), Expect = 5.9
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +2
Query: 95 SPHGYEMEG*PFRWCISRKGHRPRESWCRS*AAQLCHPQMRPC 223
SPHG +M G P RP ES+C PQ RPC
Sbjct: 37 SPHGPDMSG-PLEGADGGGDPRPGESFCPGGVPSPGPPQHRPC 78
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,232,879
Number of Sequences: 237096
Number of extensions: 1931510
Number of successful extensions: 5817
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5817
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5216942984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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