Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30578.Seq
         (533 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...   132   2e-31
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    36   0.024
Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z70204-5|CAI46566.1|  379|Caenorhabditis elegans Hypothetical pr...    27   6.4  
Z70204-4|CAA94114.2|  437|Caenorhabditis elegans Hypothetical pr...    27   6.4  
AY305832-1|AAR11977.1|  437|Caenorhabditis elegans nuclear recep...    27   6.4  
AY305831-1|AAR11976.1|  437|Caenorhabditis elegans nuclear recep...    27   6.4  
AF273775-1|AAG15124.1|  383|Caenorhabditis elegans nuclear recep...    27   6.4  
AF273774-1|AAG15123.1|  433|Caenorhabditis elegans nuclear recep...    27   6.4  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score =  132 bits (318), Expect = 2e-31
 Identities = 57/65 (87%), Positives = 63/65 (96%)
 Frame = +3

Query: 54  HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 233
           HR+EQRW DK +KKAH+GT+WK+NPFGGASHAKGIVLEK+GVEAKQPNSAIRKCVRVQLI
Sbjct: 16  HRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLI 75

Query: 234 KNGKK 248
           KNGKK
Sbjct: 76  KNGKK 80



 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 35/42 (83%), Positives = 39/42 (92%)
 Frame = +1

Query: 310 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 435
           V+GFGR GHAVGDIPGVRFK+VKVAN SL+AL+K KKERPRS
Sbjct: 102 VSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143



 Score = 35.9 bits (79), Expect = 0.018
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = +2

Query: 242 KESDPFVPRDGCLNHIEENDE 304
           K+   FVP DGCLN +EENDE
Sbjct: 79  KKITAFVPNDGCLNFVEENDE 99


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 35.5 bits (78), Expect = 0.024
 Identities = 18/32 (56%), Positives = 21/32 (65%)
 Frame = +3

Query: 135 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 230
           G SH KGIVL+ V    K+PNS  RKC  V+L
Sbjct: 72  GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL 103


>Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical
           protein T23D8.9a protein.
          Length = 811

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +2

Query: 254 PFVPRDGCLNHIEEN 298
           PFVP+DG LN I+EN
Sbjct: 654 PFVPKDGVLNVIDEN 668


>Z70204-5|CAI46566.1|  379|Caenorhabditis elegans Hypothetical
           protein C11G6.4b protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 530 VHNIYYVQDFTFYELINNALPDSRSLITMYT 438
           V N+Y V++ TFYEL++  L DS    T  T
Sbjct: 301 VFNVYSVEE-TFYELVSGRLSDSFFQTTQLT 330


>Z70204-4|CAA94114.2|  437|Caenorhabditis elegans Hypothetical
           protein C11G6.4a protein.
          Length = 437

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 530 VHNIYYVQDFTFYELINNALPDSRSLITMYT 438
           V N+Y V++ TFYEL++  L DS    T  T
Sbjct: 359 VFNVYSVEE-TFYELVSGRLSDSFFQTTQLT 388


>AY305832-1|AAR11977.1|  437|Caenorhabditis elegans nuclear receptor
           NHR-28 protein.
          Length = 437

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 530 VHNIYYVQDFTFYELINNALPDSRSLITMYT 438
           V N+Y V++ TFYEL++  L DS    T  T
Sbjct: 359 VFNVYSVEE-TFYELVSGRLSDSFFQTTQLT 388


>AY305831-1|AAR11976.1|  437|Caenorhabditis elegans nuclear receptor
           NHR-28 protein.
          Length = 437

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 530 VHNIYYVQDFTFYELINNALPDSRSLITMYT 438
           V N+Y V++ TFYEL++  L DS    T  T
Sbjct: 359 VFNVYSVEE-TFYELVSGRLSDSFFQTTQLT 388


>AF273775-1|AAG15124.1|  383|Caenorhabditis elegans nuclear receptor
           NHR-28 protein.
          Length = 383

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 530 VHNIYYVQDFTFYELINNALPDSRSLITMYT 438
           V N+Y V++ TFYEL++  L DS    T  T
Sbjct: 305 VFNVYSVEE-TFYELVSGRLSDSFFQTTQLT 334


>AF273774-1|AAG15123.1|  433|Caenorhabditis elegans nuclear receptor
           NHR-28 protein.
          Length = 433

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 530 VHNIYYVQDFTFYELINNALPDSRSLITMYT 438
           V N+Y V++ TFYEL++  L DS    T  T
Sbjct: 355 VFNVYSVEE-TFYELVSGRLSDSFFQTTQLT 384


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,284,746
Number of Sequences: 27780
Number of extensions: 288167
Number of successful extensions: 578
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)