Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30577.Seq
(765 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1314 - 25721137-25721538 53 3e-07
06_01_0755 + 5648872-5649471,5650092-5650453,5650576-5650619,565... 30 1.8
04_04_0045 + 22337089-22337385,22338437-22338715,22338728-223387... 30 1.8
02_05_0867 - 32338313-32338331,32338372-32338496,32338972-323391... 30 1.8
10_01_0053 - 767131-767962,768517-769037,769384-769601,769720-76... 29 4.1
09_04_0683 - 19431034-19431495,19431632-19431997,19432055-194323... 29 5.4
03_02_0454 + 8626832-8627134,8627255-8627606,8627705-8627748,862... 29 5.4
05_01_0274 - 2119122-2119775,2121457-2121570,2121895-2122203,212... 28 7.1
09_04_0564 + 18565583-18566449,18569662-18570123 28 9.4
>07_03_1314 - 25721137-25721538
Length = 133
Score = 52.8 bits (121), Expect = 3e-07
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
Frame = +2
Query: 254 LTGYPLAINATDIKVKEVDFNPEFISRVIPKLDWEVLWVAADSIGHSDGLPR-------- 409
+TGYPL + KE + NPEF+ ++PK+DW L A ++G + LP
Sbjct: 17 VTGYPLKLQVVKWSTKEAEPNPEFLRGMLPKIDWPALVAATQALGLPELLPEAPPTDAEL 76
Query: 410 SLENKYDENEEFLKKAHKXXXXXXXXXGHLTCPNLEDNF 526
S E + L++ H+ G L CP+ + F
Sbjct: 77 SAEGAAADEGSALRRLHRALLEIHIEEGALVCPDTDRCF 115
Score = 33.9 bits (74), Expect = 0.14
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = +1
Query: 517 RQFPISKGIPNMLLNEAEVQ 576
R FPIS+G+PNMLL+E EV+
Sbjct: 113 RCFPISRGVPNMLLHEDEVR 132
>06_01_0755 +
5648872-5649471,5650092-5650453,5650576-5650619,
5651324-5651538,5651643-5651767,5651862-5651931
Length = 471
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 661 RDWFYFLCKGSAMGACKFGFIFKYFKE 741
R W L SA GACKFGF +++FK+
Sbjct: 227 RGWVPTLLGYSAQGACKFGF-YEFFKK 252
>04_04_0045 +
22337089-22337385,22338437-22338715,22338728-22338798,
22338883-22338926,22340670-22340884,22340958-22341082,
22341142-22341220,22341278-22341367
Length = 399
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 661 RDWFYFLCKGSAMGACKFGFIFKYFKE 741
R W L SA GACKFGF +++FK+
Sbjct: 126 RGWVPTLLGYSAQGACKFGF-YEFFKK 151
>02_05_0867 -
32338313-32338331,32338372-32338496,32338972-32339186,
32340043-32340086,32340187-32340548,32341357-32341650
Length = 352
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 661 RDWFYFLCKGSAMGACKFGFIFKYFKE 741
R W L SA GACKFGF +++FK+
Sbjct: 125 RGWVPTLLGYSAQGACKFGF-YEFFKK 150
>10_01_0053 -
767131-767962,768517-769037,769384-769601,769720-769825,
769958-770017
Length = 578
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -3
Query: 325 KFRIKIDFFNFNVCRVNCKRIASQTPFKHFEVSILWVISFIIIFVLCNF 179
+ R K FFN+ +N + + T + ++ W ISF+I+ V+ F
Sbjct: 190 ELRRKGSFFNWYTFMINSGSLLASTVLVWLQDNVGWGISFVIVVVVMAF 238
>09_04_0683 -
19431034-19431495,19431632-19431997,19432055-19432326,
19433621-19433686,19433924-19433978,19434509-19434577,
19435200-19435307,19435394-19435462,19435883-19436038,
19436089-19436229,19436514-19436568,19437103-19437233,
19437382-19437486
Length = 684
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 353 WEVLWVAADSIGHSDGLP 406
W++ WVA +IGHS+ LP
Sbjct: 576 WQLWWVALRAIGHSECLP 593
>03_02_0454 +
8626832-8627134,8627255-8627606,8627705-8627748,
8629014-8629035,8629136-8629350,8629468-8629592,
8629681-8629756
Length = 378
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 661 RDWFYFLCKGSAMGACKFGFIFKYFKE 741
+ W L S+ GACKFGF +++FK+
Sbjct: 128 KGWMATLVGYSSQGACKFGF-YEFFKK 153
>05_01_0274 -
2119122-2119775,2121457-2121570,2121895-2122203,
2123743-2123904,2124046-2124129,2124315-2124500
Length = 502
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -2
Query: 497 SVPLQLPPLTRLYELSSKTLRFHHTYFLKIL--ADHHCGRCYQRPPIILPNPALVL 336
++ L PP T ++ L+ H Y L + + G RPP++LP P+ V+
Sbjct: 373 TLDLTQPPPTTTTTAAAAMLQLHRPYAFSSLPFSMYGAGGGSHRPPVVLPPPSSVV 428
>09_04_0564 + 18565583-18566449,18569662-18570123
Length = 442
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -2
Query: 422 YFLKILADHHCGRCYQRPPIILPNPA 345
Y+ L +HH C+ PP P+PA
Sbjct: 5 YYASFLKNHHRRYCFSTPPSPSPSPA 30
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,394,926
Number of Sequences: 37544
Number of extensions: 324970
Number of successful extensions: 728
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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