Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30576.Seq
         (698 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    23   3.2  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   3.2  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    22   4.2  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   7.3  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -3

Query: 690 LNQRGPITDMFADIPASGPSSPRIS 616
           LN    IT+   D     PSSPRIS
Sbjct: 49  LNAISQITNSTLDPGRKSPSSPRIS 73


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/34 (23%), Positives = 14/34 (41%)
 Frame = -1

Query: 542  WRFVQDERYSFALHVSCQLGLKKCVTWPRIYWLC 441
            + F  DER    +     + L  C+ +    W+C
Sbjct: 1142 YEFASDERIKLVIKAIIIMILSGCIIFTEGIWIC 1175


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -1

Query: 440 WV-ARPRPAAADVEKILGSVGIVTDAEKLKKVITELN 333
           WV A  RP         G V ++   EKL+ ++ +LN
Sbjct: 477 WVSAMSRPFEVRFNPHTGRVEVLDSVEKLETLVHQLN 513


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 411 SGSWTWSCHPAQPVNTR 461
           SG W W C+  +   TR
Sbjct: 27  SGIWYWQCNTDEETCTR 43


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,499
Number of Sequences: 336
Number of extensions: 2621
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)