Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30576.Seq
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 69 6e-13
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 68 1e-12
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 66 6e-12
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 30 0.37
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 28 1.1
SPCC132.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 3.4
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 26 6.0
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 26 6.0
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.9
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 68.9 bits (161), Expect = 6e-13
Identities = 27/52 (51%), Positives = 44/52 (84%)
Frame = -1
Query: 422 PAAADVEKILGSVGIVTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 267
P+A+D+E +L +VGI ++E+++ +I ELNGKD+++LIAAG EKL+++P GG
Sbjct: 18 PSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKLATVPTGG 69
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 474 MRYVAAYLLAVLGGKTTSS 418
M+Y+AAYLL +GGK + S
Sbjct: 1 MKYLAAYLLLTVGGKDSPS 19
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 67.7 bits (158), Expect = 1e-12
Identities = 28/52 (53%), Positives = 44/52 (84%)
Frame = -1
Query: 422 PAAADVEKILGSVGIVTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 267
P+A+D+E +L +VGI +AE+++ +I+ELNGK++E+LIAAG EKLS++P G
Sbjct: 18 PSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKLSTVPSAG 69
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 474 MRYVAAYLLAVLGGKTTSS 418
M+Y+AAYLL +GGK + S
Sbjct: 1 MKYLAAYLLLTVGGKQSPS 19
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 65.7 bits (153), Expect = 6e-12
Identities = 26/52 (50%), Positives = 45/52 (86%)
Frame = -1
Query: 422 PAAADVEKILGSVGIVTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 267
P+A+D+E +L +VGI +++E+++ +I EL+GKD+++LIAAG EKL+++P GG
Sbjct: 18 PSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKLATVPSGG 69
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 474 MRYVAAYLLAVLGGKTTSS 418
M+Y+AAYLL +GGK + S
Sbjct: 1 MKYLAAYLLLTVGGKNSPS 19
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 29.9 bits (64), Expect = 0.37
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +1
Query: 289 SFSRPAAISCSTSLPLSSVITFLSFSASVTIPTEPRIFSTSAAAGRGLATQHS 447
SF+ PA+ S TSL SS S SAS+T + + S+S+A+ ++ H+
Sbjct: 70 SFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSASPTSSSSSHA 122
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +1
Query: 289 SFSRPAAISCSTSLPLSSVITFLSFSASVTIPTEPRIFST 408
SF P+A + S P+SS+ +F + SA+ T P+ P + ST
Sbjct: 451 SFKAPSATTDKPSPPVSSIFSFNAPSAASTKPS-PAVSST 489
>SPCC132.03 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -1
Query: 482 LKKCVTWPRIYWLCWVARPRPAAADVEKILGSVGIVTDAEKLKKVITELNGKD 324
L+K +T + +C A P P V L +G +K+KK + EL K+
Sbjct: 85 LQKPITCTPMGPICLWAPPEPVLRSVHNTLLKMGWSISEKKMKKKLLELLAKN 137
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 407 VEKILGSVGIVTDAEKLKKVITELNG 330
V++I G VG+ D+E K + E+ G
Sbjct: 1742 VDEIFGEVGVEKDSEDYKSNVKEIKG 1767
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 25.8 bits (54), Expect = 6.0
Identities = 6/15 (40%), Positives = 12/15 (80%)
Frame = -1
Query: 479 KKCVTWPRIYWLCWV 435
+K +W RI+W+C++
Sbjct: 299 EKAESWKRIFWMCYI 313
>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -1
Query: 140 TKLYKSTRRWSLFQFMF 90
TKL K TRR SLF+F F
Sbjct: 317 TKLMKYTRRKSLFRFPF 333
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,369,105
Number of Sequences: 5004
Number of extensions: 43211
Number of successful extensions: 115
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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