Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30576.Seq
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161 63 2e-10
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764... 60 1e-09
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129 57 1e-08
07_01_1001 - 8460467-8460799 43 3e-04
07_03_0321 + 16757414-16757743 41 0.001
05_07_0174 + 28156399-28156525,28157094-28157155,28157428-28158615 29 3.5
04_04_1284 + 32376870-32376874,32376876-32376935,32377166-323773... 29 3.5
01_06_0098 - 26416768-26416998 29 4.7
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 28 6.2
06_02_0333 + 14567509-14568081,14568109-14568438,14568642-145695... 28 6.2
11_06_0533 + 24734177-24735787 28 8.2
05_01_0450 + 3577928-3579526,3579695-3579832 28 8.2
>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
Length = 113
Score = 62.9 bits (146), Expect = 2e-10
Identities = 27/53 (50%), Positives = 42/53 (79%)
Frame = -1
Query: 422 PAAADVEKILGSVGIVTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 264
P+A D++ IL SVG+ + E+L+ +++EL GKD+ ++IAAGREK +S+P GGG
Sbjct: 18 PSADDIKNILESVGVEANDERLEFLLSELEGKDITEVIAAGREKFASVPSGGG 70
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -3
Query: 474 MRYVAAYLLAVLGGKTTSS 418
M+ +AAYLLAVLGG T+ S
Sbjct: 1 MKLIAAYLLAVLGGNTSPS 19
>02_04_0074 -
19474786-19474812,19475174-19475400,19476362-19476496,
19478662-19479193
Length = 306
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/64 (45%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = -1
Query: 452 YWLCWVA-RPRPAAADVEKILGSVGIVTDAEKLKKVITELNGKDVEQLIAAGREKLSSMP 276
Y L +A P P+A D+ IL SVG D K++ ++++L GKD+ ++IA+GREK +S+P
Sbjct: 200 YLLATLAGNPNPSAEDLTTILESVGAEVDHGKMELLLSQLAGKDITEIIASGREKFASVP 259
Query: 275 VGGG 264
GGG
Sbjct: 260 CGGG 263
>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
Length = 114
Score = 57.2 bits (132), Expect = 1e-08
Identities = 27/64 (42%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = -1
Query: 452 YWLCWVA-RPRPAAADVEKILGSVGIVTDAEKLKKVITELNGKDVEQLIAAGREKLSSMP 276
Y + ++A P A D+ IL SVG D K++ ++++++GKD+ +LIA GREK +S+P
Sbjct: 7 YLMAYLAGNSSPTAEDLTTILESVGCEIDNAKMELLLSQVSGKDITELIACGREKFASVP 66
Query: 275 VGGG 264
GGG
Sbjct: 67 SGGG 70
>07_01_1001 - 8460467-8460799
Length = 110
Score = 42.7 bits (96), Expect = 3e-04
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = -1
Query: 422 PAAADVEKILGSVGIVTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 270
P DV ILG+VG D +KL + ++ GKD+ +++AAG E L+ VG
Sbjct: 18 PTKDDVRAILGAVGADVDEDKLGYLFDQVAGKDLSEILAAGSEMLAFGGVG 68
>07_03_0321 + 16757414-16757743
Length = 109
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = -1
Query: 422 PAAADVEKILGSVGIVTDAEKLKKVITELNGKDVEQLIAAGREKLS 285
P DV ILG+VG D +KL + ++ GKD+ +++AAG E L+
Sbjct: 18 PTKDDVRAILGAVGADIDEDKLGYLFDQVAGKDLAEILAAGSEMLA 63
>05_07_0174 + 28156399-28156525,28157094-28157155,28157428-28158615
Length = 458
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +1
Query: 247 SSRAGAPPPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSASVTIPTEP 393
++ +PP G DD A + C+ + S ITF + + IP+ P
Sbjct: 182 AATVSSPPSRGTDDPCIGAAIVHCTPFITDSRQITFWRMGSHMAIPSIP 230
>04_04_1284 +
32376870-32376874,32376876-32376935,32377166-32377301,
32377439-32377596,32377791-32377881,32377975-32378094,
32378166-32378234,32378354-32378445,32378578-32378680,
32378761-32378868,32378949-32379011,32379073-32379144,
32379322-32379399,32379478-32379540,32379617-32379680,
32379817-32379902,32380456-32380569,32380760-32380837,
32381068-32381303,32381486-32381576,32381706-32381894,
32382082-32382117
Length = 703
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = -1
Query: 386 VGIVTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPV 273
VG + D+EKL+ ELN + +E L+A K+ +PV
Sbjct: 428 VGNIDDSEKLRP--EELNQQTIEALVAENNLKMEILPV 463
>01_06_0098 - 26416768-26416998
Length = 76
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 428 PRPAAADVEKILGSVGIVTDAEKLKKVITELNGKD 324
P P V KI+ +V I D+ + K ++ L GKD
Sbjct: 14 PPPPPPAVVKIIETVHIEADSAEFKSIVQRLTGKD 48
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 520 VILSHYTFRVN*DLKNALRGRVFTGCAGWQD 428
++++HY ++V K+ GRV T A WQD
Sbjct: 501 MLINHYKYQVWEVFKDKFSGRVATYVADWQD 531
>06_02_0333 +
14567509-14568081,14568109-14568438,14568642-14569550,
14569598-14569777,14570416-14570698,14571339-14571832
Length = 922
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/29 (37%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +3
Query: 549 AYGSWFNRTKIINHLKWGISRF-TRSVGM 632
A G++F++TK+++++ W + R TR GM
Sbjct: 183 AGGAFFSKTKMVSNMGWSVERLQTRQRGM 211
>11_06_0533 + 24734177-24735787
Length = 536
Score = 27.9 bits (59), Expect = 8.2
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +3
Query: 411 SGSWTWSCHPA 443
+G WTW CHPA
Sbjct: 509 NGVWTWMCHPA 519
>05_01_0450 + 3577928-3579526,3579695-3579832
Length = 578
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = -1
Query: 419 AAADVEKILGS--VGIVTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPV 273
A ADVE LG+ G+V ++ K+K+ +E++ D E A + LSS +
Sbjct: 135 AMADVEAQLGASAAGLVEESLKVKRAPSEVDVADEEAASALRKRCLSSYDI 185
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,507,567
Number of Sequences: 37544
Number of extensions: 310784
Number of successful extensions: 860
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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