Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30576.Seq
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               64   8e-11
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_25083| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_27971| Best HMM Match : MgtE_N (HMM E-Value=2.8)                    28   6.3  
SB_22903| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-05)                 28   6.3  
SB_34718| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_7049| Best HMM Match : TF_Otx (HMM E-Value=1.6)                     28   8.4  
SB_48845| Best HMM Match : CheW (HMM E-Value=1.5)                      28   8.4  

>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 64.5 bits (150), Expect = 8e-11
 Identities = 28/52 (53%), Positives = 42/52 (80%)
 Frame = -1

Query: 422 PAAADVEKILGSVGIVTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 267
           P+A D++ IL SVGI +D E+L KVI+EL+GK V+++I AG+ KL+++P GG
Sbjct: 667 PSAKDIKGILDSVGIESDMERLNKVISELSGKSVDEIIQAGKSKLATVPTGG 718



 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/19 (68%), Positives = 13/19 (68%)
 Frame = -3

Query: 474 MRYVAAYLLAVLGGKTTSS 418
           MRYVAAYLLA LG     S
Sbjct: 650 MRYVAAYLLATLGNNKNPS 668


>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3066

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 539  RFVQDERYSFALHVSCQLGLKKCVTW 462
            RF++DER S A+ VS + GL     W
Sbjct: 2683 RFIEDERLSLAMEVSTKCGLDPSGVW 2708


>SB_25083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +1

Query: 271 PTGIDDSFSRPAAISCSTSLPLSSVITFLSFSASVTIPTEPRIFSTSAAA 420
           P G+ D  S  + +  + SL L S + FLS S+      EP     S  A
Sbjct: 13  PKGLVDYRSNESKLRLTRSLTLGSAVPFLSLSSCFNTQAEPAYCGLSTLA 62


>SB_27971| Best HMM Match : MgtE_N (HMM E-Value=2.8)
          Length = 235

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = -1

Query: 416 AADVEKILGSVGIVTDAEKLKKVITELNGKDVEQLIAAGR 297
           AADV+K++ S G   D +KL   I      DV++LIA+G+
Sbjct: 9   AADVDKLIAS-GKAADVDKL---IASGKAADVDKLIASGK 44



 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = -1

Query: 416 AADVEKILGSVGIVTDAEKLKKVITELNGKDVEQLIAAGR 297
           AADV+K++ S G   D +KL   I      DV++LIA+G+
Sbjct: 21  AADVDKLIAS-GKAADVDKL---IASGKAADVDKLIASGK 56



 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = -1

Query: 416 AADVEKILGSVGIVTDAEKLKKVITELNGKDVEQLIAAGR 297
           AADV+K++ S G   D +KL   I      DV++LIA+G+
Sbjct: 33  AADVDKLIAS-GKAADVDKL---IASGKAADVDKLIASGK 68



 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = -1

Query: 416 AADVEKILGSVGIVTDAEKLKKVITELNGKDVEQLIAAGR 297
           AADV+K++ S G   D +KL   I      DV++LIA+G+
Sbjct: 45  AADVDKLIAS-GKAADVDKL---IASGKAADVDKLIASGK 80


>SB_22903| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-05)
          Length = 885

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -1

Query: 521 RYSFALHVSCQLGLKKCVTWPRIYWLCWV---ARPRPAA 414
           RY+ A H+    G+++CV    ++W  W    AR RPA+
Sbjct: 423 RYAQARHLEAARGVQECVYRCAMHWRRWASERARRRPAS 461


>SB_34718| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 241 SCSSRAGAPPPTGIDDSFSRPAAISCSTSLP 333
           SC S    P  T   D+   P ++ C TSLP
Sbjct: 79  SCCSLPNGPQQTPFTDASENPISVYCYTSLP 109


>SB_7049| Best HMM Match : TF_Otx (HMM E-Value=1.6)
          Length = 235

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +1

Query: 319 STSLPLSSVITFLSFSASVTIPTEPRIFSTSAAA 420
           ++S P+S V T     AS   P+EP+  STSAAA
Sbjct: 37  ASSQPVSGVSTRTQSPASTGNPSEPQSPSTSAAA 70


>SB_48845| Best HMM Match : CheW (HMM E-Value=1.5)
          Length = 368

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 244 CSSRAGAP-PPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSASVTIP 384
           C S+   P PPT +D      A I     LP++ VITF  ++ +V++P
Sbjct: 320 CLSQPSQPEPPTEVDCKVCDGAVIV--HCLPVTGVITFDDYAENVSLP 365


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,520,977
Number of Sequences: 59808
Number of extensions: 335924
Number of successful extensions: 761
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)