Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30576.Seq
(698 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M17887-1|AAA36472.1| 115|Homo sapiens protein ( Human acidic ri... 66 2e-10
CR542248-1|CAG47044.1| 115|Homo sapiens RPLP2 protein. 66 2e-10
CR542212-1|CAG47008.1| 115|Homo sapiens RPLP2 protein. 66 2e-10
BC062314-1|AAH62314.1| 115|Homo sapiens ribosomal protein, larg... 66 2e-10
BC007573-1|AAH07573.1| 115|Homo sapiens ribosomal protein, larg... 66 2e-10
BC005920-1|AAH05920.1| 115|Homo sapiens ribosomal protein, larg... 66 2e-10
BC005354-1|AAH05354.1| 115|Homo sapiens ribosomal protein, larg... 66 2e-10
AB061837-1|BAB79475.1| 115|Homo sapiens ribosomal protein P2 pr... 66 2e-10
AL096857-1|CAB51071.1| 2701|Homo sapiens hypothetical protein pr... 31 5.2
AF488829-1|AAO49478.1| 2701|Homo sapiens HBxAg transactivated pr... 31 5.2
AB029019-1|BAA83048.2| 1919|Homo sapiens KIAA1096 protein protein. 31 5.2
U91616-1|AAC51216.1| 500|Homo sapiens I kappa B epsilon protein. 30 9.1
>M17887-1|AAA36472.1| 115|Homo sapiens protein ( Human acidic
ribosomal phosphoprotein P2 mRNA, complete cds. ).
Length = 115
Score = 65.7 bits (153), Expect = 2e-10
Identities = 30/52 (57%), Positives = 41/52 (78%)
Frame = -1
Query: 422 PAAADVEKILGSVGIVTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 267
P+A D++KIL SVGI D ++L KVI+ELNGK++E +IA G KL+S+P GG
Sbjct: 18 PSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAGG 69
Score = 30.7 bits (66), Expect = 5.2
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -3
Query: 474 MRYVAAYLLAVLGGKTTSS 418
MRYVA+YLLA LGG ++ S
Sbjct: 1 MRYVASYLLAALGGNSSPS 19
>CR542248-1|CAG47044.1| 115|Homo sapiens RPLP2 protein.
Length = 115
Score = 65.7 bits (153), Expect = 2e-10
Identities = 30/52 (57%), Positives = 41/52 (78%)
Frame = -1
Query: 422 PAAADVEKILGSVGIVTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 267
P+A D++KIL SVGI D ++L KVI+ELNGK++E +IA G KL+S+P GG
Sbjct: 18 PSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAGG 69
Score = 30.7 bits (66), Expect = 5.2
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -3
Query: 474 MRYVAAYLLAVLGGKTTSS 418
MRYVA+YLLA LGG ++ S
Sbjct: 1 MRYVASYLLAALGGNSSPS 19
>CR542212-1|CAG47008.1| 115|Homo sapiens RPLP2 protein.
Length = 115
Score = 65.7 bits (153), Expect = 2e-10
Identities = 30/52 (57%), Positives = 41/52 (78%)
Frame = -1
Query: 422 PAAADVEKILGSVGIVTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 267
P+A D++KIL SVGI D ++L KVI+ELNGK++E +IA G KL+S+P GG
Sbjct: 18 PSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAGG 69
Score = 30.7 bits (66), Expect = 5.2
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -3
Query: 474 MRYVAAYLLAVLGGKTTSS 418
MRYVA+YLLA LGG ++ S
Sbjct: 1 MRYVASYLLAALGGNSSPS 19
>BC062314-1|AAH62314.1| 115|Homo sapiens ribosomal protein, large,
P2 protein.
Length = 115
Score = 65.7 bits (153), Expect = 2e-10
Identities = 30/52 (57%), Positives = 41/52 (78%)
Frame = -1
Query: 422 PAAADVEKILGSVGIVTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 267
P+A D++KIL SVGI D ++L KVI+ELNGK++E +IA G KL+S+P GG
Sbjct: 18 PSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAGG 69
Score = 30.7 bits (66), Expect = 5.2
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -3
Query: 474 MRYVAAYLLAVLGGKTTSS 418
MRYVA+YLLA LGG ++ S
Sbjct: 1 MRYVASYLLAALGGNSSPS 19
>BC007573-1|AAH07573.1| 115|Homo sapiens ribosomal protein, large,
P2 protein.
Length = 115
Score = 65.7 bits (153), Expect = 2e-10
Identities = 30/52 (57%), Positives = 41/52 (78%)
Frame = -1
Query: 422 PAAADVEKILGSVGIVTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 267
P+A D++KIL SVGI D ++L KVI+ELNGK++E +IA G KL+S+P GG
Sbjct: 18 PSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAGG 69
Score = 30.7 bits (66), Expect = 5.2
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -3
Query: 474 MRYVAAYLLAVLGGKTTSS 418
MRYVA+YLLA LGG ++ S
Sbjct: 1 MRYVASYLLAALGGNSSPS 19
>BC005920-1|AAH05920.1| 115|Homo sapiens ribosomal protein, large,
P2 protein.
Length = 115
Score = 65.7 bits (153), Expect = 2e-10
Identities = 30/52 (57%), Positives = 41/52 (78%)
Frame = -1
Query: 422 PAAADVEKILGSVGIVTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 267
P+A D++KIL SVGI D ++L KVI+ELNGK++E +IA G KL+S+P GG
Sbjct: 18 PSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAGG 69
Score = 30.7 bits (66), Expect = 5.2
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -3
Query: 474 MRYVAAYLLAVLGGKTTSS 418
MRYVA+YLLA LGG ++ S
Sbjct: 1 MRYVASYLLAALGGNSSPS 19
>BC005354-1|AAH05354.1| 115|Homo sapiens ribosomal protein, large,
P2 protein.
Length = 115
Score = 65.7 bits (153), Expect = 2e-10
Identities = 30/52 (57%), Positives = 41/52 (78%)
Frame = -1
Query: 422 PAAADVEKILGSVGIVTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 267
P+A D++KIL SVGI D ++L KVI+ELNGK++E +IA G KL+S+P GG
Sbjct: 18 PSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAGG 69
Score = 30.7 bits (66), Expect = 5.2
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -3
Query: 474 MRYVAAYLLAVLGGKTTSS 418
MRYVA+YLLA LGG ++ S
Sbjct: 1 MRYVASYLLAALGGNSSPS 19
>AB061837-1|BAB79475.1| 115|Homo sapiens ribosomal protein P2
protein.
Length = 115
Score = 65.7 bits (153), Expect = 2e-10
Identities = 30/52 (57%), Positives = 41/52 (78%)
Frame = -1
Query: 422 PAAADVEKILGSVGIVTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 267
P+A D++KIL SVGI D ++L KVI+ELNGK++E +IA G KL+S+P GG
Sbjct: 18 PSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAGG 69
Score = 30.7 bits (66), Expect = 5.2
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -3
Query: 474 MRYVAAYLLAVLGGKTTSS 418
MRYVA+YLLA LGG ++ S
Sbjct: 1 MRYVASYLLAALGGNSSPS 19
>AL096857-1|CAB51071.1| 2701|Homo sapiens hypothetical protein
protein.
Length = 2701
Score = 30.7 bits (66), Expect = 5.2
Identities = 23/59 (38%), Positives = 30/59 (50%)
Frame = +1
Query: 241 SCSSRAGAPPPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSASVTIPTEPRIFSTSAA 417
S S+ A AP PT I S S PA++ T L +S+ S AS + PT S+ AA
Sbjct: 1830 SSSAPASAPAPTPILASVSTPASV---TILASASIPILASALASTSAPTPAPAASSPAA 1885
>AF488829-1|AAO49478.1| 2701|Homo sapiens HBxAg transactivated protein
2 protein.
Length = 2701
Score = 30.7 bits (66), Expect = 5.2
Identities = 23/59 (38%), Positives = 30/59 (50%)
Frame = +1
Query: 241 SCSSRAGAPPPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSASVTIPTEPRIFSTSAA 417
S S+ A AP PT I S S PA++ T L +S+ S AS + PT S+ AA
Sbjct: 1830 SSSAPASAPAPTPILASVSTPASV---TILASASIPILASALASTSAPTPAPAASSPAA 1885
>AB029019-1|BAA83048.2| 1919|Homo sapiens KIAA1096 protein protein.
Length = 1919
Score = 30.7 bits (66), Expect = 5.2
Identities = 23/59 (38%), Positives = 30/59 (50%)
Frame = +1
Query: 241 SCSSRAGAPPPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSASVTIPTEPRIFSTSAA 417
S S+ A AP PT I S S PA++ T L +S+ S AS + PT S+ AA
Sbjct: 853 SSSAPASAPAPTPILASVSTPASV---TILASASIPILASALASTSAPTPAPAASSPAA 908
>U91616-1|AAC51216.1| 500|Homo sapiens I kappa B epsilon protein.
Length = 500
Score = 29.9 bits (64), Expect = 9.1
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -1
Query: 575 GSIKPTTIRQQWRFVQDERYSFALHVSCQLGLKKCVTWPRIYWLCWVARPRP 420
G+++ ++ R +QD ALHV+CQ +WP + CW P P
Sbjct: 308 GAVRALVLKGASRALQDRHGDTALHVACQR-----QSWP-VPAACWKGGPEP 353
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,396,424
Number of Sequences: 237096
Number of extensions: 1618713
Number of successful extensions: 3422
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3422
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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