Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30576.Seq
(698 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97194-7|AAB52450.2| 107|Caenorhabditis elegans Hypothetical pr... 49 3e-06
AL132865-1|CAB60595.1| 110|Caenorhabditis elegans Hypothetical ... 44 8e-05
Z93393-9|CAB07695.1| 190|Caenorhabditis elegans Hypothetical pr... 31 0.79
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 31 1.0
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 31 1.0
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 31 1.0
AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical ... 28 5.6
Z70752-5|CAA94758.1| 901|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z70750-16|CAA94750.1| 901|Caenorhabditis elegans Hypothetical p... 28 7.4
AL110479-1|CAB60310.2| 311|Caenorhabditis elegans Hypothetical ... 27 9.8
>U97194-7|AAB52450.2| 107|Caenorhabditis elegans Hypothetical
protein C37A2.7 protein.
Length = 107
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/52 (44%), Positives = 33/52 (63%)
Frame = -1
Query: 422 PAAADVEKILGSVGIVTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 267
P+A DV K+L + G+ D E V+ L GK + ++IA G+ KLSS+P GG
Sbjct: 18 PSAQDVLKVLEAGGLDCDMENANSVVDALKGKTISEVIAQGKVKLSSVPSGG 69
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -3
Query: 474 MRYVAAYLLAVLGGKTTSS 418
M+Y+ AYLLA LGG + S
Sbjct: 1 MKYLGAYLLATLGGNASPS 19
>AL132865-1|CAB60595.1| 110|Caenorhabditis elegans Hypothetical
protein Y62E10A.1 protein.
Length = 110
Score = 44.4 bits (100), Expect = 8e-05
Identities = 23/51 (45%), Positives = 31/51 (60%)
Frame = -1
Query: 422 PAAADVEKILGSVGIVTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 270
P D++ IL +VG+ DAE K V++ L GK VE+LIA G L S+ G
Sbjct: 18 PKVDDLKNILSAVGVDADAETAKLVVSRLAGKTVEELIAEGSAGLVSVSGG 68
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -3
Query: 474 MRYVAAYLLAVLGG 433
MRYV+AYLLAVLGG
Sbjct: 1 MRYVSAYLLAVLGG 14
>Z93393-9|CAB07695.1| 190|Caenorhabditis elegans Hypothetical
protein Y48E1B.11 protein.
Length = 190
Score = 31.1 bits (67), Expect = 0.79
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 584 YDFGSIKPTTIRQQWRFVQDERYSFALHVSCQLG 483
Y F IK T R+ W F D++Y+F + + QLG
Sbjct: 37 YHFNCIKIDTTREDWHFSIDKKYNFNIQ-TAQLG 69
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 584 KPSKMGNFTVYEIRGDDGPEAGISANMSVIGP 679
KP+ TVY +RG DG A+ +VIGP
Sbjct: 2718 KPTDASGKTVYPVRGPDGTPLPTDASGAVIGP 2749
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 587 PSKMGNFTVYEIRGDDGPEAGISANMSVIGP 679
P+ TVY IRG DG A+ +VIGP
Sbjct: 5396 PTDESGKTVYPIRGPDGTPLPTDASGAVIGP 5426
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 587 PSKMGNFTVYEIRGDDGPEAGISANMSVIGP 679
P+ TVY +RG DG A+ +VIGP
Sbjct: 7773 PTDESGKTVYPVRGPDGTPLPTDASGAVIGP 7803
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 587 PSKMGNFTVYEIRGDDGPEAGISANMSVIGP 679
P+ TVY +RG DG A+ +VIGP
Sbjct: 8547 PTDESGKTVYPVRGPDGTPLPTDASGAVIGP 8577
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 587 PSKMGNFTVYEIRGDDGPEAGISANMSVIGP 679
P+ T+Y +RG DG A+ +VIGP
Sbjct: 6037 PTDESGKTIYPVRGPDGTPLPTDASGAVIGP 6067
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 608 TVYEIRGDDGPEAGISANMSVIGP 679
TVY +RG DG A+ +VIGP
Sbjct: 5548 TVYPVRGPDGTPLPTDASGAVIGP 5571
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 584 KPSKMGNFTVYEIRGDDGPEAGISANMSVIGP 679
KP+ TVY +RG DG A+ +VIGP
Sbjct: 2763 KPTDASGKTVYPVRGPDGTPLPTDASGAVIGP 2794
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 587 PSKMGNFTVYEIRGDDGPEAGISANMSVIGP 679
P+ TVY IRG DG A+ +VIGP
Sbjct: 5441 PTDESGKTVYPIRGPDGTPLPTDASGAVIGP 5471
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 587 PSKMGNFTVYEIRGDDGPEAGISANMSVIGP 679
P+ TVY +RG DG A+ +VIGP
Sbjct: 7818 PTDESGKTVYPVRGPDGTPLPTDASGAVIGP 7848
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 587 PSKMGNFTVYEIRGDDGPEAGISANMSVIGP 679
P+ TVY +RG DG A+ +VIGP
Sbjct: 8592 PTDESGKTVYPVRGPDGTPLPTDASGAVIGP 8622
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 587 PSKMGNFTVYEIRGDDGPEAGISANMSVIGP 679
P+ T+Y +RG DG A+ +VIGP
Sbjct: 6082 PTDESGKTIYPVRGPDGTPLPTDASGAVIGP 6112
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 608 TVYEIRGDDGPEAGISANMSVIGP 679
TVY +RG DG A+ +VIGP
Sbjct: 5593 TVYPVRGPDGTPLPTDASGAVIGP 5616
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 584 KPSKMGNFTVYEIRGDDGPEAGISANMSVIGP 679
KP+ TVY +RG DG A+ +VIGP
Sbjct: 2763 KPTDASGKTVYPVRGPDGTPLPTDASGAVIGP 2794
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 587 PSKMGNFTVYEIRGDDGPEAGISANMSVIGP 679
P+ TVY IRG DG A+ +VIGP
Sbjct: 5441 PTDESGKTVYPIRGPDGTPLPTDASGAVIGP 5471
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 587 PSKMGNFTVYEIRGDDGPEAGISANMSVIGP 679
P+ TVY +RG DG A+ +VIGP
Sbjct: 7818 PTDESGKTVYPVRGPDGTPLPTDASGAVIGP 7848
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 587 PSKMGNFTVYEIRGDDGPEAGISANMSVIGP 679
P+ TVY +RG DG A+ +VIGP
Sbjct: 8592 PTDESGKTVYPVRGPDGTPLPTDASGAVIGP 8622
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 587 PSKMGNFTVYEIRGDDGPEAGISANMSVIGP 679
P+ T+Y +RG DG A+ +VIGP
Sbjct: 6082 PTDESGKTIYPVRGPDGTPLPTDASGAVIGP 6112
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 608 TVYEIRGDDGPEAGISANMSVIGP 679
TVY +RG DG A+ +VIGP
Sbjct: 5593 TVYPVRGPDGTPLPTDASGAVIGP 5616
>AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical
protein F52C12.4 protein.
Length = 1635
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 313 SCSTSLPLSSVITFLSFSASVTIPTEPRIF 402
SCS +P+ I+ L + S P PR+F
Sbjct: 379 SCSHPVPIERYISHLMYEVSFPTPRRPRVF 408
>Z70752-5|CAA94758.1| 901|Caenorhabditis elegans Hypothetical
protein F25B3.1 protein.
Length = 901
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -1
Query: 422 PAAADVEKILGSVGIVTDAEKLKKVITEL-NGKDVEQLI 309
PA+A +I + GI EK+ +ITE+ N KD+E+ +
Sbjct: 446 PASASDHRISRTFGINESEEKVVAMITEIRNQKDLEEAV 484
>Z70750-16|CAA94750.1| 901|Caenorhabditis elegans Hypothetical
protein F25B3.1 protein.
Length = 901
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -1
Query: 422 PAAADVEKILGSVGIVTDAEKLKKVITEL-NGKDVEQLI 309
PA+A +I + GI EK+ +ITE+ N KD+E+ +
Sbjct: 446 PASASDHRISRTFGINESEEKVVAMITEIRNQKDLEEAV 484
>AL110479-1|CAB60310.2| 311|Caenorhabditis elegans Hypothetical
protein Y105C5B.1 protein.
Length = 311
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 285 RQLLTSGRNKLFNILAVELSDYFLKLLSVSY 377
R SG NKLF+ + + L+ F ++S+SY
Sbjct: 256 RMYTNSGINKLFDHVTISLTTIFPIIISISY 286
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,328,317
Number of Sequences: 27780
Number of extensions: 246929
Number of successful extensions: 690
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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