Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30576.Seq
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B) 64 6e-11
At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B) 64 6e-11
At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B) 64 6e-11
At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A) 62 3e-10
At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)... 61 6e-10
At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)... 61 6e-10
At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)... 51 6e-07
At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)... 48 8e-06
At3g10720.2 68416.m01291 pectinesterase, putative contains simil... 30 1.7
At3g63200.1 68416.m07100 patatin-related low similarity to patat... 29 2.2
At1g67140.1 68414.m07638 expressed protein 29 3.9
At1g79710.1 68414.m09296 integral membrane transporter family pr... 27 9.0
>At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 64.5 bits (150), Expect = 6e-11
Identities = 28/53 (52%), Positives = 42/53 (79%)
Frame = -1
Query: 422 PAAADVEKILGSVGIVTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 264
P +AD++ ILGSVG T+ +++ ++ E+ GKD+ +LIAAGREKL+S+P GGG
Sbjct: 18 PTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLASVPSGGG 70
>At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 64.5 bits (150), Expect = 6e-11
Identities = 28/53 (52%), Positives = 42/53 (79%)
Frame = -1
Query: 422 PAAADVEKILGSVGIVTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 264
P +AD++ ILGSVG T+ +++ ++ E+ GKD+ +LIAAGREKL+S+P GGG
Sbjct: 18 PTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLASVPSGGG 70
>At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 64.5 bits (150), Expect = 6e-11
Identities = 28/53 (52%), Positives = 42/53 (79%)
Frame = -1
Query: 422 PAAADVEKILGSVGIVTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 264
P +AD++ ILGSVG T+ +++ ++ E+ GKD+ +LIAAGREKL+S+P GGG
Sbjct: 18 PTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLASVPSGGG 70
>At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A)
Length = 115
Score = 62.5 bits (145), Expect = 3e-10
Identities = 27/53 (50%), Positives = 40/53 (75%)
Frame = -1
Query: 422 PAAADVEKILGSVGIVTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 264
P D++ ILGSVG T+ +++ ++ E+ GKD+ +LIAAGREKL+S+P GGG
Sbjct: 18 PTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLASVPSGGG 70
>At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)
acidic ribosomal protein P2, maize, PIR:S54179
Length = 111
Score = 61.3 bits (142), Expect = 6e-10
Identities = 25/53 (47%), Positives = 42/53 (79%)
Frame = -1
Query: 422 PAAADVEKILGSVGIVTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 264
P+A +++ I+G+VG D E ++ ++ E++GKD+ +LIA+GREKL+S+P GGG
Sbjct: 18 PSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGREKLASVPSGGG 70
>At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)
acidic ribosomal protein P2, maize, PIR:S54179
Length = 111
Score = 61.3 bits (142), Expect = 6e-10
Identities = 25/53 (47%), Positives = 42/53 (79%)
Frame = -1
Query: 422 PAAADVEKILGSVGIVTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 264
P+A +++ I+G+VG D E ++ ++ E++GKD+ +LIA+GREKL+S+P GGG
Sbjct: 18 PSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGREKLASVPSGGG 70
>At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)
acidic ribosomal protein P2, Parthenium
argentatum,SWISSPROT:RLA2_PARAR
Length = 114
Score = 51.2 bits (117), Expect = 6e-07
Identities = 23/53 (43%), Positives = 36/53 (67%)
Frame = -1
Query: 422 PAAADVEKILGSVGIVTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 264
P+ AD++KI+ SVG D EK+ + + +DV +LIA GREK++++ GGG
Sbjct: 18 PSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGREKMAALSSGGG 70
>At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)
similar to acidic ribosomal protein P2b (rpp2b)
GB:U62753 GI:2431770 from [Zea mays]
Length = 115
Score = 47.6 bits (108), Expect = 8e-06
Identities = 23/52 (44%), Positives = 34/52 (65%)
Frame = -1
Query: 422 PAAADVEKILGSVGIVTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 267
P + D++KIL SVG D K+ + + + DV +LIAAGREK+S++ GG
Sbjct: 18 PTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGREKMSALSSGG 69
>At3g10720.2 68416.m01291 pectinesterase, putative contains
similarity to pectinesterase from Vitis vinifera
GI:15081598, Prunus persica SP|Q43062; contains Pfam
profile PF01095 pectinesterase
Length = 619
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 441 AQPVNTRPRNAFFKS*LTRNV*CERITFVLNKPPLLAYGSWFNRTKII-NH 590
A P NTRP + +F V E I +NK L+ G N+T I NH
Sbjct: 322 AAPNNTRPEDGYFVIYAREGVYEEYIVVPINKKNLMLMGDGINKTIITGNH 372
>At3g63200.1 68416.m07100 patatin-related low similarity to
patatin-like latex protein allergen Hev b 7 - Hevea
brasiliensis, EMBL:AF113546; contains patatin domain
PF01734
Length = 384
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Frame = -1
Query: 404 EKILGSVGIVTDAEKLKKVITELNGKDVE----QLIAAGREKLSSMP 276
E++L G+ T +K+++TE NG+ +E +L+A+G+ L P
Sbjct: 325 EELLKERGVETAPFGVKRILTESNGERIEGFVQRLVASGKSSLPPSP 371
>At1g67140.1 68414.m07638 expressed protein
Length = 2158
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +3
Query: 288 QLLTSGRNKLFNILAVELSDYFLKLLSVSYDTDGAEDLLNVS 413
Q L++GR L+++L L++LS S+ D + D+L VS
Sbjct: 1403 QSLSAGRFFSSGFLSIDLCQELLQVLSYSFHMDSSWDILAVS 1444
>At1g79710.1 68414.m09296 integral membrane transporter family
protein similar to high affinity folic acid/methotrexate
transporter 5 (GI:21898554) [Leishmania tarentolae];
Interpro IPR001991/ PR00173 Sodium:dicarboxylater
symporter family
Length = 497
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -2
Query: 655 GYPRFWPIIPTDLVNREIPHFRWFMILVLLNQL-PYASNGGLFKTNVILSH 506
G P ++ I+ + V+ I +W +LVL ++L P G F + + H
Sbjct: 361 GLPDYFFIVVDEFVSHMISRIKWLPLLVLSSKLCPAGMEGTFFALLMSIEH 411
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,714,792
Number of Sequences: 28952
Number of extensions: 234514
Number of successful extensions: 608
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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