Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30574.Seq
         (505 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein S15|Schizosac...    99   2e-22
SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein S15|S...    99   2e-22
SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit S19...    41   9e-05
SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces pom...    27   1.6  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   4.9  
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch...    25   8.5  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    25   8.5  

>SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 153

 Score =   99 bits (238), Expect = 2e-22
 Identities = 42/48 (87%), Positives = 46/48 (95%)
 Frame = +2

Query: 254 QMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGA 397
           +MVGS+VGIYNGK FNQVEI+PEMIGHYLGEFS+TYKP KHGRPGIGA
Sbjct: 96  EMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPGIGA 143



 Score = 97.9 bits (233), Expect = 8e-22
 Identities = 57/140 (40%), Positives = 68/140 (48%)
 Frame = +3

Query: 9   LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 188
           L+KKR FR F YRGV+L+QLLD+  EQL++L H         GL       ++KLR+AK 
Sbjct: 14  LRKKRSFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKT 73

Query: 189 EAPPNEKPEIVKTHLRNMIIVPRWSVQLSAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 368
           EAP NEKP  VKTHLRNMII+P     +                                
Sbjct: 74  EAPLNEKPATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKP 133

Query: 369 XXXVDPVSVLTHSSRFIPLK 428
                P    THSSRFIPLK
Sbjct: 134 TKHGRPGIGATHSSRFIPLK 153


>SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 154

 Score =   99 bits (238), Expect = 2e-22
 Identities = 42/48 (87%), Positives = 46/48 (95%)
 Frame = +2

Query: 254 QMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGA 397
           +MVGS+VGIYNGK FNQVEI+PEMIGHYLGEFS+TYKP KHGRPGIGA
Sbjct: 97  EMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPGIGA 144



 Score = 98.7 bits (235), Expect = 4e-22
 Identities = 57/140 (40%), Positives = 68/140 (48%)
 Frame = +3

Query: 9   LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 188
           L+KKR FR F YRGV+L+QLLD+  EQL++L H         GL       ++KLR+AK 
Sbjct: 15  LRKKRTFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKS 74

Query: 189 EAPPNEKPEIVKTHLRNMIIVPRWSVQLSAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 368
           EAP NEKP  VKTHLRNMII+P     +                                
Sbjct: 75  EAPLNEKPATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKP 134

Query: 369 XXXVDPVSVLTHSSRFIPLK 428
                P    THSSRFIPLK
Sbjct: 135 TKHGRPGIGATHSSRFIPLK 154


>SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit
           S19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 41.1 bits (92), Expect = 9e-05
 Identities = 18/37 (48%), Positives = 27/37 (72%)
 Frame = +2

Query: 254 QMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYK 364
           +MVG+   ++NGK++  V+I  +MIGH LGEF+ T K
Sbjct: 62  RMVGAQFMVHNGKSYANVKITEDMIGHKLGEFAPTRK 98


>SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +1

Query: 10  SRKSVFSGSSLTGELISISSLICPMSNSWN 99
           S+ +  +   +TG +++ISS +C + N +N
Sbjct: 145 SQAAALASKDITGTIVAISSELCAVENQFN 174


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 284 NGKTFNQVEIKPEMIGHYLGEFSVTYKPV 370
           N +TF+  E   E     + +F VT KP+
Sbjct: 829 NSETFDDFEFSVEQFNSLINQFVVTGKPI 857


>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 186 KEAPPNEKPEIVKTHLRNMII 248
           K A P++KP +  THL +++I
Sbjct: 60  KRARPSQKPPLRSTHLPHLLI 80


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 138 LKRKPMALVKKLRRAKKEAPPNEKPEIVKTHL 233
           L R+P  + +K R   KEA PN    I++  L
Sbjct: 10  LPRRPPYMAEKARATLKEAFPNTDDAIIRAVL 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,869,425
Number of Sequences: 5004
Number of extensions: 33495
Number of successful extensions: 82
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)