Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30574.Seq
         (505 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29066| Best HMM Match : No HMM Matches (HMM E-Value=.)             124   3e-29
SB_48737| Best HMM Match : WD40 (HMM E-Value=1.5e-36)                  28   5.0  
SB_27203| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   5.0  
SB_22837| Best HMM Match : REJ (HMM E-Value=0.057)                     27   8.8  
SB_8684| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.8  

>SB_29066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score =  124 bits (300), Expect = 3e-29
 Identities = 69/140 (49%), Positives = 80/140 (57%)
 Frame = +3

Query: 9   LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 188
           +K+KR FRKFTYRGVDLDQLLD+ +EQLMEL+          GLKRKP+AL+K+LR+AKK
Sbjct: 10  IKRKRTFRKFTYRGVDLDQLLDLSHEQLMELVCCRQRRRFTRGLKRKPLALMKRLRKAKK 69

Query: 189 EAPPNEKPEIVKTHLRNMIIVPRWSVQLSAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 368
           EA P EKPE+VKTHLRNMIIVP     +                                
Sbjct: 70  EAAPMEKPEVVKTHLRNMIIVPEMIGSVVGVYNGKTFTQVEIKPEMIGHYLGEFSITYKP 129

Query: 369 XXXVDPVSVLTHSSRFIPLK 428
                P    THSSRFIPLK
Sbjct: 130 VKHGRPGIGATHSSRFIPLK 149



 Score =  101 bits (243), Expect = 3e-22
 Identities = 42/48 (87%), Positives = 47/48 (97%)
 Frame = +2

Query: 254 QMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGA 397
           +M+GS+VG+YNGKTF QVEIKPEMIGHYLGEFS+TYKPVKHGRPGIGA
Sbjct: 92  EMIGSVVGVYNGKTFTQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGA 139


>SB_48737| Best HMM Match : WD40 (HMM E-Value=1.5e-36)
          Length = 885

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 314 KPEMIGHYLGEFSVTYKPVKHGRPGIGANTQLKVHSAQVERLKQPLG 454
           K E IGH         + +K   PG+G   +L  H  Q++RL+   G
Sbjct: 815 KKECIGHVQKRVGSALRKLKRENPGLGGQGKLTDH--QIDRLQNYYG 859


>SB_27203| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 527

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = +1

Query: 1   TKPSRKSVFSGSSLTGELISISSLICPMSNSWN*CMPVRAGGSLVVLNV 147
           TKP   S  SGS+  G L   SS  C  S+S +  + V  GG + V  V
Sbjct: 179 TKPDAMSASSGSASAGRLYGNSSW-CSTSSSVSEYLQVDLGGVMTVSGV 226


>SB_22837| Best HMM Match : REJ (HMM E-Value=0.057)
          Length = 643

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 18/64 (28%), Positives = 27/64 (42%)
 Frame = +2

Query: 245 HRSQMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGANTQLKVHSA 424
           H  Q+ G      +G     VE+K    GHY+ + +VT      G   +  N +  V+ A
Sbjct: 275 HWDQVSGPSSAEMSGADNQVVEVKKLTEGHYVFKLTVTDDKGLTGSGTVAVNVKKDVNQA 334

Query: 425 QVER 436
            V R
Sbjct: 335 PVAR 338


>SB_8684| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 398

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 314 KPEMIGHYLGEFSVTYKPVKHGRPGIGANTQLKVHSAQVERLK 442
           K E IGH         + +K   PG+G   +L  H  Q++RL+
Sbjct: 189 KKECIGHVQKRVGSALRKLKRENPGLGGQGKLTDH--QIDRLQ 229


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,186,711
Number of Sequences: 59808
Number of extensions: 262752
Number of successful extensions: 518
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)