Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30574.Seq
         (505 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   2.4  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   2.4  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   2.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   4.2  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   4.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   4.2  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   4.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   9.6  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +2

Query: 152 NGIGQEAASRQERGSSE*EARDREDSLEKHDHRSQMVGSIVGIYN 286
           N    E   R+ R +S+  +RDR++  +  +H+  ++ S+   YN
Sbjct: 48  NSYKNEREYRKYRETSKERSRDRKEREKSKEHK--IISSLSNNYN 90


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +2

Query: 152 NGIGQEAASRQERGSSE*EARDREDSLEKHDHRSQMVGSIVGIYN 286
           N    E   R+ R +S+  +RDR++  +  +H+  ++ S+   YN
Sbjct: 48  NSYKNEREYRKYRETSKERSRDRKEREKSKEHK--IISSLSNNYN 90


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +2

Query: 152 NGIGQEAASRQERGSSE*EARDREDSLEKHDHRSQMVGSIVGIYN 286
           N    E   R+ R +S+  +RDR++  +  +H+  ++ S+   YN
Sbjct: 48  NSYKNEREYRKYRETSKERSRDRKEREKSKEHK--IISSLSNNYN 90


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 13  RKSVFSGSSLTGELISISSLICPMSNSW 96
           RKS  S +SL   LI   ++ CP+  SW
Sbjct: 226 RKSP-SLTSLNAYLIKNQTITCPIKVSW 252


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 13  RKSVFSGSSLTGELISISSLICPMSNSW 96
           RKS  S +SL   LI   ++ CP+  SW
Sbjct: 226 RKSP-SLTSLNAYLIKNQTITCPIKVSW 252


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 13  RKSVFSGSSLTGELISISSLICPMSNSW 96
           RKS  S +SL   LI   ++ CP+  SW
Sbjct: 277 RKSP-SLTSLNAYLIKNQTITCPIKVSW 303


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 13  RKSVFSGSSLTGELISISSLICPMSNSW 96
           RKS  S +SL   LI   ++ CP+  SW
Sbjct: 226 RKSP-SLTSLNAYLIKNQTITCPIKVSW 252


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 411 LSCVLAPIPG 382
           +SC++AP PG
Sbjct: 5   ISCLVAPFPG 14


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,766
Number of Sequences: 438
Number of extensions: 2483
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)