Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30574.Seq
(505 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B) ribo... 111 3e-25
At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D) ribo... 106 7e-24
At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Stro... 106 7e-24
At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C) ribo... 101 2e-22
At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E) 99 8e-22
At5g63070.1 68418.m07914 40S ribosomal protein S15, putative 91 5e-19
At1g33850.1 68414.m04194 40S ribosomal protein S15, putative sim... 66 1e-11
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 40 0.001
At1g75890.1 68414.m08815 family II extracellular lipase 2 (EXL2)... 28 3.1
At3g13090.1 68416.m01639 ABC transporter, putative similar to MR... 27 7.2
>At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B)
ribosomal protein S15 - Arabidopsis thaliana,
EMBL:Z23161
Length = 152
Score = 111 bits (267), Expect = 3e-25
Identities = 60/140 (42%), Positives = 74/140 (52%)
Frame = +3
Query: 9 LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 188
L KKR F+KF+++GVDLD LLDMP + L+EL GL RKPMAL+KKLR+AK
Sbjct: 13 LAKKRTFKKFSFKGVDLDALLDMPTDDLVELFPSRIRRRMSRGLTRKPMALIKKLRKAKL 72
Query: 189 EAPPNEKPEIVKTHLRNMIIVPRWSVQLSAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 368
+AP EKPE+V+THLRNM+I+P +
Sbjct: 73 DAPAGEKPEVVRTHLRNMVIMPEMIGSIIGVYNGKTFNQIEIKPEMIGHYLAEFSITYKP 132
Query: 369 XXXVDPVSVLTHSSRFIPLK 428
P THSSRFIPLK
Sbjct: 133 VRHGKPGHGATHSSRFIPLK 152
Score = 96.3 bits (229), Expect = 1e-20
Identities = 38/48 (79%), Positives = 46/48 (95%)
Frame = +2
Query: 254 QMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGA 397
+M+GSI+G+YNGKTFNQ+EIKPEMIGHYL EFS+TYKPV+HG+PG GA
Sbjct: 95 EMIGSIIGVYNGKTFNQIEIKPEMIGHYLAEFSITYKPVRHGKPGHGA 142
>At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D)
ribosomal protein S15 - Arabidopsis thaliana,
EMBL:Z23161
Length = 152
Score = 106 bits (255), Expect = 7e-24
Identities = 60/138 (43%), Positives = 71/138 (51%)
Frame = +3
Query: 15 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 194
KKR F+KF ++GVDLD LLDM + L++L GL RKPMAL+KKLR+AK+EA
Sbjct: 15 KKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREA 74
Query: 195 PPNEKPEIVKTHLRNMIIVPRWSVQLSAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 374
P EKPE V+THLRNMIIVP +
Sbjct: 75 PAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK 134
Query: 375 XVDPVSVLTHSSRFIPLK 428
P THSSRFIPLK
Sbjct: 135 HGRPGVGATHSSRFIPLK 152
Score = 99 bits (238), Expect = 8e-22
Identities = 40/48 (83%), Positives = 47/48 (97%)
Frame = +2
Query: 254 QMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGA 397
+M+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+GA
Sbjct: 95 EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGA 142
>At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Strong
similarity to Oryza 40S ribosomal protein S15. ESTs
gb|R29788,gb|ATTS0365 come from this gene
Length = 152
Score = 106 bits (255), Expect = 7e-24
Identities = 60/138 (43%), Positives = 71/138 (51%)
Frame = +3
Query: 15 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 194
KKR F+KF ++GVDLD LLDM + L++L GL RKPMAL+KKLR+AK+EA
Sbjct: 15 KKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREA 74
Query: 195 PPNEKPEIVKTHLRNMIIVPRWSVQLSAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 374
P EKPE V+THLRNMIIVP +
Sbjct: 75 PQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK 134
Query: 375 XVDPVSVLTHSSRFIPLK 428
P THSSRFIPLK
Sbjct: 135 HGRPGVGATHSSRFIPLK 152
Score = 99 bits (238), Expect = 8e-22
Identities = 40/48 (83%), Positives = 47/48 (97%)
Frame = +2
Query: 254 QMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGA 397
+M+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+GA
Sbjct: 95 EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGA 142
>At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C)
ribosomal protein S15 - Arabidopsis thaliana,
EMBL:Z23161
Length = 150
Score = 101 bits (243), Expect = 2e-22
Identities = 49/80 (61%), Positives = 58/80 (72%)
Frame = +3
Query: 15 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 194
KKR F+KF++RGVDLD LLDM + L++L GL RKPMAL+KKLR+AK EA
Sbjct: 13 KKRTFKKFSFRGVDLDALLDMSTDDLVKLFPSRIRRRFSRGLTRKPMALIKKLRKAKIEA 72
Query: 195 PPNEKPEIVKTHLRNMIIVP 254
P EKP V+THLRNMIIVP
Sbjct: 73 PAGEKPAAVRTHLRNMIIVP 92
Score = 99.5 bits (237), Expect = 1e-21
Identities = 39/48 (81%), Positives = 47/48 (97%)
Frame = +2
Query: 254 QMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGA 397
+M+GS++G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+GA
Sbjct: 93 EMIGSVIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGA 140
>At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E)
Length = 149
Score = 99 bits (238), Expect = 8e-22
Identities = 49/80 (61%), Positives = 57/80 (71%)
Frame = +3
Query: 15 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 194
KKR F+KF++RGVDLD LLDM E L++ GL RKPMAL+KKLR+AK EA
Sbjct: 12 KKRTFKKFSFRGVDLDALLDMSIEDLVKHFSSRIRRRFSRGLTRKPMALIKKLRKAKMEA 71
Query: 195 PPNEKPEIVKTHLRNMIIVP 254
P EKP V+THLRNMIIVP
Sbjct: 72 PAGEKPASVRTHLRNMIIVP 91
Score = 99 bits (238), Expect = 8e-22
Identities = 40/48 (83%), Positives = 47/48 (97%)
Frame = +2
Query: 254 QMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGA 397
+M+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+GA
Sbjct: 92 EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGA 139
>At5g63070.1 68418.m07914 40S ribosomal protein S15, putative
Length = 160
Score = 90.6 bits (215), Expect = 5e-19
Identities = 45/82 (54%), Positives = 57/82 (69%), Gaps = 2/82 (2%)
Frame = +3
Query: 15 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 194
KKR F+KF++RG ++D LL M N L +L + GLK++P+ L+KKLRRAKKEA
Sbjct: 17 KKRTFKKFSFRGFNVDALLKMSNVDLAKLFNARVRRRFYRGLKKQPLILIKKLRRAKKEA 76
Query: 195 PPNE--KPEIVKTHLRNMIIVP 254
KPE+VKTHLRNMIIVP
Sbjct: 77 SDENKMKPEVVKTHLRNMIIVP 98
Score = 72.9 bits (171), Expect = 1e-13
Identities = 30/46 (65%), Positives = 38/46 (82%)
Frame = +2
Query: 254 QMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGI 391
+M+GS+VG++NGK FN++ IKPEMIGHYL EFS+T K V H RP I
Sbjct: 99 EMIGSVVGVHNGKKFNEIVIKPEMIGHYLAEFSMTCKKVNHHRPRI 144
>At1g33850.1 68414.m04194 40S ribosomal protein S15, putative
similar to SP|Q08112 40S ribosomal protein S15
{Arabidopsis thaliana}
Length = 70
Score = 66.1 bits (154), Expect = 1e-11
Identities = 32/58 (55%), Positives = 39/58 (67%)
Frame = +3
Query: 15 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 188
KKRIF+KF++RGVDLD LLDM E L++ G RKPMAL+KKLR+A K
Sbjct: 12 KKRIFKKFSFRGVDLDALLDMSTEDLVKHFSSRIRRRFSRGFTRKPMALIKKLRKAVK 69
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/43 (44%), Positives = 25/43 (58%)
Frame = +2
Query: 254 QMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGR 382
+ V S V IYNGKT + +I +GH GEF+ T K KH +
Sbjct: 168 EYVDSAVRIYNGKTHVRCKITEGKVGHKFGEFAFTRKVKKHAK 210
>At1g75890.1 68414.m08815 family II extracellular lipase 2 (EXL2)
EXL2 (PMID:11431566); similar to anter-specific
proline-rich protein (APG) SP:P40602 [Arabidopsis
thaliana]
Length = 379
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 338 LGEFSVTYKPVKHGRPGIGANTQLKVHSAQVERLKQPLG 454
L + YKP+ + GI + QLK+ VE++K+ +G
Sbjct: 142 LSTYLFIYKPLLFLKGGIALSQQLKLFEEYVEKMKKMVG 180
>At3g13090.1 68416.m01639 ABC transporter, putative similar to
MRP-like ABC transporter [Arabidopsis thaliana]
GI:2316016; contains Pfam profile: PF00005 ABC
transporter
Length = 1466
Score = 27.1 bits (57), Expect = 7.2
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -3
Query: 119 ARTGMH*FHELLIGHI--KELIEINSPVSELPENTLFL 12
A TG H F E+L+G + K +I + V LPE L L
Sbjct: 758 AHTGSHLFKEVLLGLLRHKTVIYVTHQVEFLPEADLIL 795
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,950,327
Number of Sequences: 28952
Number of extensions: 184526
Number of successful extensions: 457
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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