Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30572.Seq
(508 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62244 Cluster: 40S ribosomal protein S15a; n=205; Euka... 114 1e-24
UniRef50_UPI0000608089 Cluster: PREDICTED: similar to Rps15a pro... 109 3e-23
UniRef50_Q9LX88 Cluster: 40S ribosomal protein S15a-4; n=14; Mag... 100 2e-20
UniRef50_UPI0000D9C93A Cluster: PREDICTED: similar to ribosomal ... 100 4e-20
UniRef50_A6NIS3 Cluster: Uncharacterized protein ENSP00000348155... 93 3e-18
UniRef50_UPI0001552BC3 Cluster: PREDICTED: similar to Rps15a pro... 92 8e-18
UniRef50_Q01GJ6 Cluster: Ribosomal protein S15; n=1; Ostreococcu... 50 7e-12
UniRef50_O05636 Cluster: 30S ribosomal protein S8P; n=12; Archae... 68 1e-10
UniRef50_Q9M0E0 Cluster: 40S ribosomal protein S15a-5; n=5; Magn... 66 6e-10
UniRef50_Q8SQL9 Cluster: 40S RIBOSOMAL PROTEIN S15A; n=1; Enceph... 64 1e-09
UniRef50_Q8U014 Cluster: 30S ribosomal protein S8P; n=24; Archae... 63 3e-09
UniRef50_Q8PV35 Cluster: 30S ribosomal protein S8P; n=14; Euryar... 61 1e-08
UniRef50_Q6L1B2 Cluster: 30S ribosomal protein S8P; n=4; Euryarc... 59 7e-08
UniRef50_A7D102 Cluster: Ribosomal protein S8; n=1; Halorubrum l... 58 2e-07
UniRef50_O28369 Cluster: 30S ribosomal protein S8P; n=3; Euryarc... 52 1e-05
UniRef50_A0RVY8 Cluster: 30S ribosomal protein S8P; n=3; Thermop... 51 2e-05
UniRef50_Q74NG1 Cluster: 30S ribosomal protein S8P; n=1; Nanoarc... 46 4e-04
UniRef50_Q7XYA5 Cluster: Ribosome protein S8; n=1; Griffithsia j... 37 0.23
UniRef50_UPI0000E1E986 Cluster: PREDICTED: hypothetical protein;... 35 0.92
UniRef50_P56801 Cluster: Chloroplast 30S ribosomal protein S8; n... 34 1.6
UniRef50_A7PGU8 Cluster: Chromosome chr17 scaffold_16, whole gen... 34 2.1
UniRef50_Q2S3Q0 Cluster: 30S ribosomal protein S8; n=2; Sphingob... 33 3.7
UniRef50_P73307 Cluster: 30S ribosomal protein S8; n=9; cellular... 33 4.9
UniRef50_Q73NX9 Cluster: ISTde2, transposase; n=4; Bacteria|Rep:... 32 6.5
UniRef50_A6G6I3 Cluster: Putative uncharacterized protein; n=1; ... 32 8.6
UniRef50_Q10LD6 Cluster: Retrotransposon protein, putative, Ty3-... 32 8.6
UniRef50_Q2JIL4 Cluster: 30S ribosomal protein S8; n=93; cellula... 32 8.6
UniRef50_O67566 Cluster: 30S ribosomal protein S8; n=2; Aquifex|... 32 8.6
UniRef50_Q9UKA1 Cluster: F-box/LRR-repeat protein 5; n=38; Eutel... 32 8.6
>UniRef50_P62244 Cluster: 40S ribosomal protein S15a; n=205;
Eukaryota|Rep: 40S ribosomal protein S15a - Homo sapiens
(Human)
Length = 130
Score = 114 bits (274), Expect = 1e-24
Identities = 54/71 (76%), Positives = 61/71 (85%)
Frame = -3
Query: 467 MVRMAVLRAAFKPVHNAEKRGKSQVLIRPCSKVIVKFFAVMMRHGYIGEFGIVEDPRAGK 288
MVRM VL A K ++NAEKRGK QVLIRPCSKVIV+F VMM+HGYIGEF I++D RAGK
Sbjct: 1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGK 60
Query: 287 IVVNLSGRLNK 255
IVVNL+GRLNK
Sbjct: 61 IVVNLTGRLNK 71
Score = 105 bits (253), Expect = 4e-22
Identities = 48/64 (75%), Positives = 55/64 (85%), Gaps = 1/64 (1%)
Frame = -2
Query: 270 GQTKQGGVISPRFDVPINDVERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 94
G+ + GVISPRFDV + D+E+W NLLPSRQFG++VLTTS GIMDHEEARRKH GGKIL
Sbjct: 67 GRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKIL 126
Query: 93 GFFF 82
GFFF
Sbjct: 127 GFFF 130
>UniRef50_UPI0000608089 Cluster: PREDICTED: similar to Rps15a
protein; n=5; Amniota|Rep: PREDICTED: similar to Rps15a
protein - Mus musculus
Length = 253
Score = 109 bits (263), Expect = 3e-23
Identities = 57/82 (69%), Positives = 64/82 (78%), Gaps = 1/82 (1%)
Frame = -3
Query: 497 TLRSPS*ILA-MVRMAVLRAAFKPVHNAEKRGKSQVLIRPCSKVIVKFFAVMMRHGYIGE 321
TL PS + A MVRM VL A K ++NAEKRGK QVLIRPCSKVIV F VMM+HGY GE
Sbjct: 113 TLFLPSSLAATMVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVWFLTVMMKHGYTGE 172
Query: 320 FGIVEDPRAGKIVVNLSGRLNK 255
F I++D R GKIVVNL+GRLNK
Sbjct: 173 FEIIDDHRDGKIVVNLTGRLNK 194
Score = 94.3 bits (224), Expect = 1e-18
Identities = 43/64 (67%), Positives = 52/64 (81%), Gaps = 1/64 (1%)
Frame = -2
Query: 270 GQTKQGGVISPRFDVPINDVERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 94
G+ + GVIS RFDV + D+++W NLLP RQFG++VLTT GI+DHEEARRKH GGKIL
Sbjct: 190 GRLNKCGVISLRFDVQLKDLDKWQNNLLPLRQFGFIVLTTLAGIIDHEEARRKHTGGKIL 249
Query: 93 GFFF 82
GFFF
Sbjct: 250 GFFF 253
>UniRef50_Q9LX88 Cluster: 40S ribosomal protein S15a-4; n=14;
Magnoliophyta|Rep: 40S ribosomal protein S15a-4 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 130
Score = 100 bits (240), Expect = 2e-20
Identities = 47/71 (66%), Positives = 57/71 (80%)
Frame = -3
Query: 467 MVRMAVLRAAFKPVHNAEKRGKSQVLIRPCSKVIVKFFAVMMRHGYIGEFGIVEDPRAGK 288
MVR++VL K ++NAEKRGK QV+IRP SKVI+KF VM +HGYIGEF V+D R+GK
Sbjct: 1 MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 287 IVVNLSGRLNK 255
IVV L+GRLNK
Sbjct: 61 IVVELNGRLNK 71
Score = 99.5 bits (237), Expect = 4e-20
Identities = 44/64 (68%), Positives = 55/64 (85%), Gaps = 1/64 (1%)
Frame = -2
Query: 270 GQTKQGGVISPRFDVPINDVERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 94
G+ + GVISPRFDV + ++E WT LLPSRQFG++VLTTS GIMDHEEARRK++GGK+L
Sbjct: 67 GRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVL 126
Query: 93 GFFF 82
GFF+
Sbjct: 127 GFFY 130
>UniRef50_UPI0000D9C93A Cluster: PREDICTED: similar to ribosomal
protein S15a; n=1; Macaca mulatta|Rep: PREDICTED:
similar to ribosomal protein S15a - Macaca mulatta
Length = 345
Score = 99.5 bits (237), Expect = 4e-20
Identities = 46/62 (74%), Positives = 54/62 (87%)
Frame = -3
Query: 440 AFKPVHNAEKRGKSQVLIRPCSKVIVKFFAVMMRHGYIGEFGIVEDPRAGKIVVNLSGRL 261
A K ++NAEKRGK QVLIR CSKVIV+F +VMM+HGYIGEF I++D AGKIVVNL+GRL
Sbjct: 176 ALKSINNAEKRGKRQVLIRLCSKVIVRFLSVMMKHGYIGEFEIIDDHTAGKIVVNLTGRL 235
Query: 260 NK 255
NK
Sbjct: 236 NK 237
Score = 76.6 bits (180), Expect = 3e-13
Identities = 35/58 (60%), Positives = 44/58 (75%), Gaps = 1/58 (1%)
Frame = -2
Query: 270 GQTKQGGVISPRFDVPINDVERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGK 100
G+ + GVI+ RFDV D+E+W NL PS QFG++VLTTS GIMDHEEAR+KH G +
Sbjct: 233 GRLNKCGVINTRFDVQPKDLEKWRNNLFPSCQFGFIVLTTSAGIMDHEEARQKHTGSR 290
>UniRef50_A6NIS3 Cluster: Uncharacterized protein ENSP00000348155;
n=33; Eukaryota|Rep: Uncharacterized protein
ENSP00000348155 - Homo sapiens (Human)
Length = 129
Score = 93.1 bits (221), Expect = 3e-18
Identities = 50/83 (60%), Positives = 63/83 (75%), Gaps = 4/83 (4%)
Frame = -3
Query: 467 MVRMAVLRAAFKPVHNAEKRGKSQVLIRPCSKVIVKFFAVMMRHGYIGEFGIVEDPRAGK 288
MVR VL A K ++NA+KRGK QVL+RPCS+VI++F V M+HGYIGEF I +D RAGK
Sbjct: 1 MVRTNVLADALKRINNAKKRGKRQVLLRPCSEVIIRFLTV-MKHGYIGEFEITDDHRAGK 59
Query: 287 IVVNLSGRLNK--VVS--FHLVL 231
+VV L+ RLNK V+S FH+ L
Sbjct: 60 MVVYLTDRLNKCGVISPRFHVQL 82
Score = 92.7 bits (220), Expect = 4e-18
Identities = 42/58 (72%), Positives = 48/58 (82%), Gaps = 1/58 (1%)
Frame = -2
Query: 252 GVISPRFDVPINDVERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 82
GVISPRF V + D+E+W NLLPS QFG+++LTTS GI D EEARRKH GGKILGFFF
Sbjct: 72 GVISPRFHVQLKDLEKWQNNLLPSYQFGFIILTTSAGITDREEARRKHTGGKILGFFF 129
>UniRef50_UPI0001552BC3 Cluster: PREDICTED: similar to Rps15a
protein; n=3; Mus musculus|Rep: PREDICTED: similar to
Rps15a protein - Mus musculus
Length = 239
Score = 91.9 bits (218), Expect = 8e-18
Identities = 45/73 (61%), Positives = 54/73 (73%)
Frame = -3
Query: 473 LAMVRMAVLRAAFKPVHNAEKRGKSQVLIRPCSKVIVKFFAVMMRHGYIGEFGIVEDPRA 294
+ MV M VL A K ++AEK GK Q IR CSK IV+F VMM+HGYI EF I++D RA
Sbjct: 97 VTMVEMNVLVDALKSTNSAEKGGKRQFPIRLCSKAIVRFLTVMMKHGYISEFEIIDDHRA 156
Query: 293 GKIVVNLSGRLNK 255
GK+VVNL+GRLNK
Sbjct: 157 GKMVVNLTGRLNK 169
Score = 91.9 bits (218), Expect = 8e-18
Identities = 41/63 (65%), Positives = 51/63 (80%), Gaps = 1/63 (1%)
Frame = -2
Query: 270 GQTKQGGVISPRFDVPINDVERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 94
G+ + GVISPRFDV + D+E+W NLLP+RQFG++VLTT GIMD EE R+KH GG+IL
Sbjct: 165 GRLNKCGVISPRFDVQLKDLEKWQNNLLPARQFGFIVLTTLAGIMDREEGRQKHTGGEIL 224
Query: 93 GFF 85
GFF
Sbjct: 225 GFF 227
>UniRef50_Q01GJ6 Cluster: Ribosomal protein S15; n=1; Ostreococcus
tauri|Rep: Ribosomal protein S15 - Ostreococcus tauri
Length = 144
Score = 49.6 bits (113), Expect(2) = 7e-12
Identities = 20/31 (64%), Positives = 26/31 (83%)
Frame = -3
Query: 428 VHNAEKRGKSQVLIRPCSKVIVKFFAVMMRH 336
++NAEKRGK QVL+RP SKV++KF VM +H
Sbjct: 46 MYNAEKRGKRQVLVRPVSKVVIKFLQVMQKH 76
Score = 42.7 bits (96), Expect(2) = 7e-12
Identities = 18/27 (66%), Positives = 22/27 (81%)
Frame = -3
Query: 335 GYIGEFGIVEDPRAGKIVVNLSGRLNK 255
GYI EF ++D RAGKIVV L+GR+NK
Sbjct: 107 GYINEFEFIDDHRAGKIVVELNGRINK 133
>UniRef50_O05636 Cluster: 30S ribosomal protein S8P; n=12;
Archaea|Rep: 30S ribosomal protein S8P - Sulfolobus
acidocaldarius
Length = 133
Score = 68.1 bits (159), Expect = 1e-10
Identities = 32/65 (49%), Positives = 41/65 (63%)
Frame = -3
Query: 449 LRAAFKPVHNAEKRGKSQVLIRPCSKVIVKFFAVMMRHGYIGEFGIVEDPRAGKIVVNLS 270
L A ++N E R Q LI P SK+I+ VM + GYIGEF ++D RAGKI+V L
Sbjct: 7 LANALATLYNNEMRRNKQALITPASKLIISVLRVMQKEGYIGEFEYIDDGRAGKIIVQLL 66
Query: 269 GRLNK 255
GR+NK
Sbjct: 67 GRINK 71
Score = 47.2 bits (107), Expect = 2e-04
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Frame = -2
Query: 273 LGQTKQGGVISPRFDVPINDVERWTNL----LPSRQFGYLVLTTSGGIMDHEEARRKHLG 106
LG+ + G ISPR+ + N + R + LPS++ G ++++T G+M H + R+ +G
Sbjct: 66 LGRINKCGPISPRYPLDYNGLLRLPDYIRKYLPSKEIGIIIISTPKGVMSHRDGIREKIG 125
Query: 105 GKILGFFF 82
G LG+ +
Sbjct: 126 GVTLGYVY 133
>UniRef50_Q9M0E0 Cluster: 40S ribosomal protein S15a-5; n=5;
Magnoliophyta|Rep: 40S ribosomal protein S15a-5 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 129
Score = 65.7 bits (153), Expect = 6e-10
Identities = 28/64 (43%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Frame = -2
Query: 270 GQTKQGGVISPRFDVPINDVERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 94
G+ ++ R DV ++E++T LP+RQ+GY+V+TT GI+DHEEA ++++GG++L
Sbjct: 66 GRVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVGGQVL 125
Query: 93 GFFF 82
GFF+
Sbjct: 126 GFFY 129
Score = 58.8 bits (136), Expect = 7e-08
Identities = 26/65 (40%), Positives = 40/65 (61%)
Frame = -3
Query: 452 VLRAAFKPVHNAEKRGKSQVLIRPCSKVIVKFFAVMMRHGYIGEFGIVEDPRAGKIVVNL 273
+L A + + NAE+RGK+ V ++P S V+ F +M GYI F + + R G+I V+L
Sbjct: 5 ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDL 64
Query: 272 SGRLN 258
GR+N
Sbjct: 65 QGRVN 69
>UniRef50_Q8SQL9 Cluster: 40S RIBOSOMAL PROTEIN S15A; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S15A
- Encephalitozoon cuniculi
Length = 128
Score = 64.5 bits (150), Expect = 1e-09
Identities = 29/64 (45%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = -2
Query: 270 GQTKQGGVISPRFDVPINDVERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 94
G+ + G ISP + V + +E + T LLP+RQFG+++ TS GI+DH+E +++GGKIL
Sbjct: 65 GRLNRCGAISPNYIVKRDGIEDFRTRLLPARQFGHVLFNTSKGILDHKECLTENVGGKIL 124
Query: 93 GFFF 82
G+F+
Sbjct: 125 GYFY 128
Score = 60.9 bits (141), Expect = 2e-08
Identities = 27/67 (40%), Positives = 43/67 (64%)
Frame = -3
Query: 455 AVLRAAFKPVHNAEKRGKSQVLIRPCSKVIVKFFAVMMRHGYIGEFGIVEDPRAGKIVVN 276
A L K ++NA + GK Q+L+R ++ + F M+RHGYI F + D R+GK +++
Sbjct: 3 AALANMCKAINNASRAGKRQLLLRFSTEEMRMFLLQMLRHGYISGFSYIHDKRSGKSIID 62
Query: 275 LSGRLNK 255
L+GRLN+
Sbjct: 63 LNGRLNR 69
>UniRef50_Q8U014 Cluster: 30S ribosomal protein S8P; n=24;
Archaea|Rep: 30S ribosomal protein S8P - Pyrococcus
furiosus
Length = 130
Score = 63.3 bits (147), Expect = 3e-09
Identities = 31/71 (43%), Positives = 44/71 (61%)
Frame = -3
Query: 467 MVRMAVLRAAFKPVHNAEKRGKSQVLIRPCSKVIVKFFAVMMRHGYIGEFGIVEDPRAGK 288
M + L A + N+E+ GK +V I+P SK+I + VM ++GYIGEF ++D RAG
Sbjct: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
Query: 287 IVVNLSGRLNK 255
V L GR+NK
Sbjct: 61 YRVQLLGRINK 71
Score = 63.3 bits (147), Expect = 3e-09
Identities = 25/65 (38%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Frame = -2
Query: 273 LGQTKQGGVISPRFDVPINDVERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKI 97
LG+ + G I PRF V +++ E+W LP+ +FG L+++TS G+M H+EA K +GG++
Sbjct: 66 LGRINKAGAIKPRFPVKVSEFEKWEKRFLPAFEFGILIVSTSQGVMSHKEAIEKGIGGRL 125
Query: 96 LGFFF 82
+ + +
Sbjct: 126 IAYVY 130
>UniRef50_Q8PV35 Cluster: 30S ribosomal protein S8P; n=14;
Euryarchaeota|Rep: 30S ribosomal protein S8P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 130
Score = 61.3 bits (142), Expect = 1e-08
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Frame = -2
Query: 273 LGQTKQGGVISPRFDVPINDVERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKI 97
+G+ + G I PR+ V ERW LP++ FG L+LTTS G+M EAR K +GG++
Sbjct: 66 VGRINKCGAIKPRYSVGTGSFERWEKQFLPAKNFGALILTTSSGVMSQYEARDKKIGGQL 125
Query: 96 LGFFF 82
L + +
Sbjct: 126 LAYVY 130
Score = 58.8 bits (136), Expect = 7e-08
Identities = 31/71 (43%), Positives = 40/71 (56%)
Frame = -3
Query: 467 MVRMAVLRAAFKPVHNAEKRGKSQVLIRPCSKVIVKFFAVMMRHGYIGEFGIVEDPRAGK 288
MV + L A + NAE GKS ++RP SK I VM GYIG+F ++D +AG
Sbjct: 1 MVLLDPLANALSTIKNAEAIGKSSCIVRPASKNIGNVLKVMQDLGYIGDFEFIDDGKAGI 60
Query: 287 IVVNLSGRLNK 255
V L GR+NK
Sbjct: 61 YSVTLVGRINK 71
>UniRef50_Q6L1B2 Cluster: 30S ribosomal protein S8P; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S8P -
Picrophilus torridus
Length = 129
Score = 58.8 bits (136), Expect = 7e-08
Identities = 26/58 (44%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Frame = -2
Query: 252 GVISPRFDVPINDVERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 82
GVI PR V +++ER+ + LP++ FG ++LTT+ GIM H EAR+ +GGK+L + +
Sbjct: 72 GVIKPRLSVKNSNIERYESRYLPAQDFGIIILTTTKGIMSHIEARKLGIGGKLLAYVY 129
>UniRef50_A7D102 Cluster: Ribosomal protein S8; n=1; Halorubrum
lacusprofundi ATCC 49239|Rep: Ribosomal protein S8 -
Halorubrum lacusprofundi ATCC 49239
Length = 147
Score = 57.6 bits (133), Expect = 2e-07
Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = -2
Query: 270 GQTKQGGVISPRFDVPINDVERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 94
G + G + PR+ ++ E+W LP+R +G L++TTS G+M H EAR + +GG+++
Sbjct: 84 GAINECGAVKPRYSAGADEFEKWEKRYLPARDYGTLIVTTSHGVMSHYEAREEGIGGQVI 143
Query: 93 GFFF 82
+ +
Sbjct: 144 AYVY 147
Score = 42.7 bits (96), Expect = 0.005
Identities = 21/62 (33%), Positives = 30/62 (48%)
Frame = -3
Query: 440 AFKPVHNAEKRGKSQVLIRPCSKVIVKFFAVMMRHGYIGEFGIVEDPRAGKIVVNLSGRL 261
A + NAE G + P S +I V+ GY+ F V+D +AGK V L G +
Sbjct: 27 ALAGMDNAESVGHLSYTVEPASNIIGSVLEVLYDRGYVDGFEYVDDGKAGKFEVELKGAI 86
Query: 260 NK 255
N+
Sbjct: 87 NE 88
>UniRef50_O28369 Cluster: 30S ribosomal protein S8P; n=3;
Euryarchaeota|Rep: 30S ribosomal protein S8P -
Archaeoglobus fulgidus
Length = 129
Score = 51.6 bits (118), Expect = 1e-05
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = -2
Query: 270 GQTKQGGVISPRFDVPINDVERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 94
G G I PRF + + E + LP+R FG L+++T+ G+M ++AR++ LGG +L
Sbjct: 66 GNINDCGAIRPRFSSSVTEYEMYEKRYLPARDFGILIVSTTKGVMSQKDARKQRLGGVLL 125
Query: 93 GFFF 82
+ +
Sbjct: 126 AYVY 129
Score = 51.2 bits (117), Expect = 1e-05
Identities = 27/64 (42%), Positives = 36/64 (56%)
Frame = -3
Query: 449 LRAAFKPVHNAEKRGKSQVLIRPCSKVIVKFFAVMMRHGYIGEFGIVEDPRAGKIVVNLS 270
L A + NAE G+ + I+P SK+I VM +GYI F VE+ R GK +V LS
Sbjct: 6 LSNAMIAIKNAEMVGEKKCEIKPASKLIGNVLKVMKDYGYIKGFEYVENHRGGKFIVELS 65
Query: 269 GRLN 258
G +N
Sbjct: 66 GNIN 69
>UniRef50_A0RVY8 Cluster: 30S ribosomal protein S8P; n=3;
Thermoprotei|Rep: 30S ribosomal protein S8P -
Cenarchaeum symbiosum
Length = 130
Score = 50.8 bits (116), Expect = 2e-05
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = -2
Query: 273 LGQTKQGGVISPRFDVPINDVERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKI 97
L + + G ISPRF V + W LPS G LV+TT+ G+M H EA + +GG +
Sbjct: 66 LAKITKCGAISPRFKVKKGEYTFWEQQYLPSYDRGMLVVTTNQGVMSHHEAAERGIGGFL 125
Query: 96 LGFFF 82
+G+ +
Sbjct: 126 IGYVY 130
Score = 49.2 bits (112), Expect = 5e-05
Identities = 24/66 (36%), Positives = 36/66 (54%)
Frame = -3
Query: 452 VLRAAFKPVHNAEKRGKSQVLIRPCSKVIVKFFAVMMRHGYIGEFGIVEDPRAGKIVVNL 273
+L F ++N E R + + P SK+ V+ + + GYIGEF VED R GK V+L
Sbjct: 6 ILANLFVTLYNTEARRRGDCQVYPTSKLGVEVLGTLKKAGYIGEFEHVEDSRGGKFSVHL 65
Query: 272 SGRLNK 255
++ K
Sbjct: 66 LAKITK 71
>UniRef50_Q74NG1 Cluster: 30S ribosomal protein S8P; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S8P -
Nanoarchaeum equitans
Length = 129
Score = 46.4 bits (105), Expect = 4e-04
Identities = 19/60 (31%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Frame = -2
Query: 258 QGGVISPRFDVPINDVERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 82
+ I PRF V +++E++ LP+ FG L+L+TS G++ + EA+ + +GG ++ + +
Sbjct: 70 EANAIKPRFPVEYSELEKYEKRYLPALNFGRLILSTSKGLITNREAKEQKIGGVLIAYVY 129
Score = 38.7 bits (86), Expect = 0.075
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = -3
Query: 422 NAEKRGKSQVLIRPCSKVIVKFFAVMMRHGYIGEFGIVEDPRAGKIVVNLSGRLNK 255
N ++G+ + P S +I+K +M R GYI + +V+ R I + LS N+
Sbjct: 15 NVRRKGEDKTAFFPVSNLIIKLVEIMKREGYIKNYRLVDSSRGKIIEIELSEYFNE 70
>UniRef50_Q7XYA5 Cluster: Ribosome protein S8; n=1; Griffithsia
japonica|Rep: Ribosome protein S8 - Griffithsia japonica
(Red alga)
Length = 142
Score = 37.1 bits (82), Expect = 0.23
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = -2
Query: 237 RFDVPINDVERWTNLLPSRQ--FGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 82
R VP + V R LP + G +L+T G+M EAR+K LGG+++G F
Sbjct: 89 RVSVPSHRVYRKITQLPLARAGLGTWILSTPNGVMHCTEARQKRLGGEVIGEVF 142
>UniRef50_UPI0000E1E986 Cluster: PREDICTED: hypothetical protein;
n=1; Pan troglodytes|Rep: PREDICTED: hypothetical
protein - Pan troglodytes
Length = 116
Score = 35.1 bits (77), Expect = 0.92
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = -3
Query: 329 IGEFGIVEDPRAGKIVVNLSGRLNKVVS 246
IG+F +++D RAGKIV NLS ++ +V S
Sbjct: 9 IGKFEVIDDHRAGKIVENLSDKVTQVCS 36
>UniRef50_P56801 Cluster: Chloroplast 30S ribosomal protein S8;
n=118; Viridiplantae|Rep: Chloroplast 30S ribosomal
protein S8 - Arabidopsis thaliana (Mouse-ear cress)
Length = 134
Score = 34.3 bits (75), Expect = 1.6
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = -2
Query: 174 GYLVLTTSGGIMDHEEARRKHLGGKILGFFF 82
G ++L+TS GIM EAR K +GG+IL + +
Sbjct: 104 GIVILSTSQGIMTDREARLKRIGGEILCYIW 134
>UniRef50_A7PGU8 Cluster: Chromosome chr17 scaffold_16, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr17 scaffold_16, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 93
Score = 33.9 bits (74), Expect = 2.1
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = -2
Query: 174 GYLVLTTSGGIMDHEEARRKHLGGKIL 94
G ++L+TS GIM EAR K +GG+IL
Sbjct: 2 GIVILSTSRGIMTDREARLKRIGGEIL 28
>UniRef50_Q2S3Q0 Cluster: 30S ribosomal protein S8; n=2;
Sphingobacteriales|Rep: 30S ribosomal protein S8 -
Salinibacter ruber (strain DSM 13855)
Length = 133
Score = 33.1 bits (72), Expect = 3.7
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = -2
Query: 174 GYLVLTTSGGIMDHEEARRKHLGGKILGFFF 82
G ++L+TS G+M +EARR +GG++L F
Sbjct: 103 GIVILSTSRGVMSDKEARRFGVGGEVLAKVF 133
>UniRef50_P73307 Cluster: 30S ribosomal protein S8; n=9; cellular
organisms|Rep: 30S ribosomal protein S8 - Synechocystis
sp. (strain PCC 6803)
Length = 133
Score = 32.7 bits (71), Expect = 4.9
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = -2
Query: 174 GYLVLTTSGGIMDHEEARRKHLGGKILGFFF 82
G +++TS GIM EARR+ +GG+IL + +
Sbjct: 103 GIAIVSTSHGIMTDREARRQGIGGEILCYIW 133
>UniRef50_Q73NX9 Cluster: ISTde2, transposase; n=4; Bacteria|Rep:
ISTde2, transposase - Treponema denticola
Length = 358
Score = 32.3 bits (70), Expect = 6.5
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -2
Query: 258 QGGVISPRFDVPINDVERWTNLLPSRQFGY 169
+G IS D+ I VE W N P R FGY
Sbjct: 321 KGADISKYSDIQIKQVENWINNYPRRMFGY 350
>UniRef50_A6G6I3 Cluster: Putative uncharacterized protein; n=1;
Plesiocystis pacifica SIR-1|Rep: Putative
uncharacterized protein - Plesiocystis pacifica SIR-1
Length = 219
Score = 31.9 bits (69), Expect = 8.6
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 270 REIYNNLASSGILNDSKLTDVTVPHHHCEKLNDDFGTGPDEDLTFP 407
RE YN L +GI + D++ E+LN D G G ++ P
Sbjct: 135 RETYNKLTGNGIEGGNTQADISAAFRDLEQLNMDIGPGIADNEALP 180
>UniRef50_Q10LD6 Cluster: Retrotransposon protein, putative,
Ty3-gypsy subclass; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Retrotransposon protein, putative,
Ty3-gypsy subclass - Oryza sativa subsp. japonica (Rice)
Length = 612
Score = 31.9 bits (69), Expect = 8.6
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 276 IYNNLASSGILNDSKLTDVTVPH-HHCEKLND 368
IYNNL SS ++ LT T PH +H + LND
Sbjct: 223 IYNNLVSSDLVRKLGLTTYTHPHPYHIQWLND 254
>UniRef50_Q2JIL4 Cluster: 30S ribosomal protein S8; n=93; cellular
organisms|Rep: 30S ribosomal protein S8 - Synechococcus
sp. (strain JA-2-3B'a(2-13)) (Cyanobacteria
bacteriumYellowstone B-Prime)
Length = 136
Score = 31.9 bits (69), Expect = 8.6
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = -2
Query: 174 GYLVLTTSGGIMDHEEARRKHLGGKIL 94
G +++TS GIM EAR++ +GG++L
Sbjct: 106 GIAIISTSNGIMTDREARKQGIGGEVL 132
>UniRef50_O67566 Cluster: 30S ribosomal protein S8; n=2;
Aquifex|Rep: 30S ribosomal protein S8 - Aquifex aeolicus
Length = 168
Score = 31.9 bits (69), Expect = 8.6
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 183 RQFGYLVLTTSGGIMDHEEARRKHLGGKILGF 88
R G +++T G+M EARR GG+++ F
Sbjct: 135 RGLGIAIVSTDAGVMTDHEARRMRKGGEVIAF 166
>UniRef50_Q9UKA1 Cluster: F-box/LRR-repeat protein 5; n=38;
Euteleostomi|Rep: F-box/LRR-repeat protein 5 - Homo
sapiens (Human)
Length = 691
Score = 31.9 bits (69), Expect = 8.6
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = -2
Query: 303 SQSWQDCCKSLGQTKQGGVISPRFDVPINDVERWTNLLPSRQFGYLVLTTS 151
S SW CC+SL G DV + + R +L S Q G+L +TS
Sbjct: 375 SWSWLGCCQSLRHLDLSG-CEKITDVALEKISRALGILTSHQSGFLKTSTS 424
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 434,389,610
Number of Sequences: 1657284
Number of extensions: 8438592
Number of successful extensions: 20197
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 19650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20179
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30528237263
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -