Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30572.Seq
         (508 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   2.1  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    22   3.6  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    22   3.6  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    22   3.6  
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    22   3.6  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    22   3.6  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   6.3  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   6.3  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 196 SAPLTTVWLPSPYNKW 149
           SA + TVW+ S  N+W
Sbjct: 448 SAYVATVWINSVINRW 463


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -3

Query: 440 AFKPVHNAEKRGKSQVLIRPCSKVIVKFFAVMMRHGY 330
           AF   H+ ++ G SQ+L     K      A M+ H Y
Sbjct: 299 AFIDNHDNQRTGGSQILTYKNPKPYKMAIAFMLAHPY 335


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -3

Query: 440 AFKPVHNAEKRGKSQVLIRPCSKVIVKFFAVMMRHGY 330
           AF   H+ ++ G SQ+L     K      A M+ H Y
Sbjct: 300 AFIDNHDNQRTGGSQILTYKNPKPYKMAIAFMLAHPY 336


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -3

Query: 440 AFKPVHNAEKRGKSQVLIRPCSKVIVKFFAVMMRHGY 330
           AF   H+ ++ G SQ+L     K      A M+ H Y
Sbjct: 300 AFIDNHDNQRTGGSQILTYKNPKPYKMAIAFMLAHPY 336


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 483 ELNLSHGAYGRIACRL 436
           E++L+ G Y R+AC +
Sbjct: 46  EISLTTGNYSRLACEI 61


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 483 ELNLSHGAYGRIACRL 436
           E++L+ G Y R+AC +
Sbjct: 228 EISLTTGNYSRLACEI 243


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 261 KQGGVISPRFDVPINDVERWTN 196
           ++G  + P FD P +  E W N
Sbjct: 288 ERGVRVIPEFDAPAHVGEGWQN 309


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 263 LNKVVSFHLVLMFPSTMLKDGLICSPHDSLVT*SLQQV 150
           L +V    L  +FP TM+    IC     L+  ++Q V
Sbjct: 177 LPQVPPLPLPPIFPPTMINPSAICESAAQLIFMNVQWV 214


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,526
Number of Sequences: 336
Number of extensions: 2071
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12049355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)