Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30572.Seq
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...    90   2e-19
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...    90   2e-19
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    29   0.30 
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    27   2.1  
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch...    26   3.7  
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    25   4.9  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    25   4.9  
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb...    25   4.9  
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch...    25   4.9  
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom...    25   4.9  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   6.5  

>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 90.2 bits (214), Expect = 2e-19
 Identities = 42/71 (59%), Positives = 53/71 (74%)
 Frame = -3

Query: 467 MVRMAVLRAAFKPVHNAEKRGKSQVLIRPCSKVIVKFFAVMMRHGYIGEFGIVEDPRAGK 288
           MVR +VL      + NAE+RG+ QVLIRP SKVIVKF  VM +HGYI EF  ++D R+GK
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60

Query: 287 IVVNLSGRLNK 255
           IV+ L+GR+NK
Sbjct: 61  IVIQLNGRINK 71



 Score = 87.8 bits (208), Expect = 8e-19
 Identities = 41/64 (64%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
 Frame = -2

Query: 270 GQTKQGGVISPRFDVPINDVERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 94
           G+  + GVISPRF+V + D+E+W N LLPSRQ G +VLTTS GIM H EAR K  GGKIL
Sbjct: 67  GRINKCGVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKIL 126

Query: 93  GFFF 82
           GFF+
Sbjct: 127 GFFY 130


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 90.2 bits (214), Expect = 2e-19
 Identities = 42/71 (59%), Positives = 53/71 (74%)
 Frame = -3

Query: 467 MVRMAVLRAAFKPVHNAEKRGKSQVLIRPCSKVIVKFFAVMMRHGYIGEFGIVEDPRAGK 288
           MVR +VL      + NAE+RG+ QVLIRP SKVIVKF  VM +HGYI EF  ++D R+GK
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60

Query: 287 IVVNLSGRLNK 255
           IV+ L+GR+NK
Sbjct: 61  IVIQLNGRINK 71



 Score = 87.8 bits (208), Expect = 8e-19
 Identities = 41/64 (64%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
 Frame = -2

Query: 270 GQTKQGGVISPRFDVPINDVERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 94
           G+  + GVISPRF+V + D+E+W N LLPSRQ G +VLTTS GIM H EAR K  GGKIL
Sbjct: 67  GRINKCGVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKIL 126

Query: 93  GFFF 82
           GFF+
Sbjct: 127 GFFY 130


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 29.5 bits (63), Expect = 0.30
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = +1

Query: 334 PCLIITAKNLTMTLEQGLMRT*LFPRFSALCTGLKAARNTAIRTMAK 474
           P L+I A N   +L+  L R   F R   L    + AR   +RTMAK
Sbjct: 314 PVLVIGATNRPDSLDSALRRAGRFDREICLTVPSQDAREKILRTMAK 360


>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +3

Query: 342 HHHCEKLNDDFG--TGPDEDLTFPSL 413
           H++ E  N+     TGP ED+TF SL
Sbjct: 275 HNYLESCNNHLSMLTGPSEDITFSSL 300


>SPBC30D10.08 |mgm101||mitochondrial nucleoid
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 267

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
 Frame = +2

Query: 221 MGTSKRGEMTPPCLVCPRDLQQSCQLWDPQR---FQTHRCNR--ASSSLRKT*R*LWNR 382
           + T+  G  +   + C +DL  + +LWDP+    F+   C      + L K  R LW R
Sbjct: 197 IATASEGCKSNALMRCCKDLGVASELWDPRYIRVFKRENCVEVFVENVLTKKRRKLWRR 255


>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 291 ASSGILNDSKLTDVTVPHHHCEKLNDDFGTG 383
           A + I ND + T  T+PH+      D++G G
Sbjct: 154 AGARIQNDDESTTDTIPHNDDGTEGDEYGEG 184


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -3

Query: 281 VNLSGRLNKVVSFHLVLMFPSTMLKDGLICS 189
           V+L+ +   +  F++ + FPS ++KDG+  S
Sbjct: 88  VSLNSKKEPLSKFNVKIHFPSNVMKDGVAFS 118


>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -2

Query: 345 DEARLHR*VWNR*GSQSWQDCCKSLGQTKQGGVISPRFDVPIN 217
           D  RL +  W R   Q   DCC+SL   ++ GV    F    N
Sbjct: 106 DPGRLWKGSW-RWYDQYMLDCCRSLSDIEKDGVTLEEFSCLAN 147


>SPBC18E5.10 |||iron sulfur cluster assembly protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = +3

Query: 297 SGILNDSKLTDVTVPHHHCEKLNDDFGTGP-----DEDLTFPSLFS 419
           SGILN ++   VT+     + L+   GTG      D D  F SL +
Sbjct: 322 SGILNKNQCEQVTMDFDSLKALDSSLGTGSVIVLNDHDQIFESLLN 367


>SPAC890.04c |||ribosome biogenesis protein Ytm1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 188 PHDSLVT*SLQQVVASWTMKKPEENTLEEK 99
           P+ S +T SL Q +  W +++PE     EK
Sbjct: 154 PNQSFLTASLDQKIFHWVIEEPESMLDAEK 183


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 177 FGYLVLTTSGGIMDHEEARRKHLGGKIL 94
           FGY+V+TT+    +   A  K LG ++L
Sbjct: 798 FGYVVMTTNQDAENALSAAGKQLGNRVL 825


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,806,619
Number of Sequences: 5004
Number of extensions: 35018
Number of successful extensions: 83
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)