Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30572.Seq
         (508 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823          103   8e-23
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419...   102   1e-22
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289           63   1e-10
11_06_0099 + 20070925-20073867                                         28   5.0  
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286...    27   6.5  

>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
          Length = 130

 Score =  103 bits (247), Expect = 8e-23
 Identities = 49/71 (69%), Positives = 58/71 (81%)
 Frame = -3

Query: 467 MVRMAVLRAAFKPVHNAEKRGKSQVLIRPCSKVIVKFFAVMMRHGYIGEFGIVEDPRAGK 288
           MVR++VL  A K ++NAEKRGK QVLIRP SKVI+KF  VM +HGYIGEF  V+D R+GK
Sbjct: 1   MVRVSVLNDALKTMYNAEKRGKRQVLIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60

Query: 287 IVVNLSGRLNK 255
           IVV L+GRLNK
Sbjct: 61  IVVELNGRLNK 71



 Score =  101 bits (242), Expect = 3e-22
 Identities = 45/64 (70%), Positives = 55/64 (85%), Gaps = 1/64 (1%)
 Frame = -2

Query: 270 GQTKQGGVISPRFDVPINDVERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 94
           G+  + GVISPRFDV + ++E WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+L
Sbjct: 67  GRLNKCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVL 126

Query: 93  GFFF 82
           GFF+
Sbjct: 127 GFFY 130


>02_03_0219 +
           16541350-16541482,16541605-16541765,16541863-16541940,
           16543176-16543445
          Length = 213

 Score =  102 bits (245), Expect = 1e-22
 Identities = 48/71 (67%), Positives = 58/71 (81%)
 Frame = -3

Query: 467 MVRMAVLRAAFKPVHNAEKRGKSQVLIRPCSKVIVKFFAVMMRHGYIGEFGIVEDPRAGK 288
           MVR++VL  A K ++NAEKRGK QV+IRP SKVI+KF  VM +HGYIGEF  V+D R+GK
Sbjct: 1   MVRVSVLNDALKTMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60

Query: 287 IVVNLSGRLNK 255
           IVV L+GRLNK
Sbjct: 61  IVVELNGRLNK 71



 Score = 90.6 bits (215), Expect = 6e-19
 Identities = 42/60 (70%), Positives = 50/60 (83%), Gaps = 1/60 (1%)
 Frame = -2

Query: 270 GQTKQGGVISPRFDVPINDVERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 94
           G+  + GVISPRFDV + ++E WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK L
Sbjct: 67  GRLNKCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKEL 126


>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
          Length = 129

 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 25/63 (39%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
 Frame = -2

Query: 270 GQTKQGGVISPRFDVPINDVERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 94
           G+ K    ++ R D+   ++E++   +LP+RQ+GY+V+TT  G++DHEEA ++++GG++L
Sbjct: 66  GRIKDCKALTYRQDIRAKEIEQYRVRMLPTRQWGYVVITTPNGVLDHEEAIKQNVGGQVL 125

Query: 93  GFF 85
           G+F
Sbjct: 126 GYF 128



 Score = 59.7 bits (138), Expect = 1e-09
 Identities = 27/64 (42%), Positives = 41/64 (64%)
 Frame = -3

Query: 452 VLRAAFKPVHNAEKRGKSQVLIRPCSKVIVKFFAVMMRHGYIGEFGIVEDPRAGKIVVNL 273
           +L  A + + NAE+RGK+  L++P S V+V F  +M   GYI +F +++  R GKI V L
Sbjct: 5   ILNDALRTMVNAERRGKATALLQPISGVMVSFLNIMKHRGYIKKFEVIDPHRVGKINVEL 64

Query: 272 SGRL 261
            GR+
Sbjct: 65  HGRI 68


>11_06_0099 + 20070925-20073867
          Length = 980

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 351 SDDEARLHR*VWNR*GSQSWQDCCKSLG 268
           +DD A LH   W R G Q  +DCC+  G
Sbjct: 56  TDDPAGLHA-SWRRGGGQLQEDCCQWRG 82


>01_01_0365 -
           2859617-2859722,2860047-2860489,2862232-2862391,
           2863431-2863516,2863648-2866272
          Length = 1139

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/25 (48%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
 Frame = -3

Query: 311 VEDPRAGKIVVNLSGRLNK--VVSF 243
           V+D ++G+I++   GRLNK  V+SF
Sbjct: 912 VDDHKSGEIILEFDGRLNKWGVISF 936


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,975,402
Number of Sequences: 37544
Number of extensions: 248273
Number of successful extensions: 519
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)