Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30572.Seq
         (508 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)             59   2e-09
SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   2e-05
SB_50281| Best HMM Match : Utp21 (HMM E-Value=1.1)                     29   2.9  

>SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)
          Length = 120

 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 37/71 (52%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
 Frame = -3

Query: 467 MVRMAVLRAAFKPVHNAEKRGKSQVLIRPCSKVIVKFFAVMMRHGYIGEFGIVEDPRAGK 288
           MVR+ VL  A   + NAEKRGK QV IRP SKVIVKF  VMM+H        V  PR G+
Sbjct: 1   MVRVNVLNDALVSICNAEKRGKRQVQIRPSSKVIVKFLTVMMKH--------VAQPRIGE 52

Query: 287 IVVN-LSGRLN 258
           +V    SG L+
Sbjct: 53  MVTRPCSGALS 63


>SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 29

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 20/27 (74%), Positives = 24/27 (88%), Gaps = 1/27 (3%)
 Frame = -2

Query: 252 GVISPRFDVPINDVERW-TNLLPSRQF 175
           GVISPRFDV + D+E+W +NLLPSRQF
Sbjct: 2   GVISPRFDVGVRDIEQWASNLLPSRQF 28


>SB_50281| Best HMM Match : Utp21 (HMM E-Value=1.1)
          Length = 549

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -2

Query: 255 GGVISPRFDVPINDVERWTNLLPSRQFGYL 166
           G  ISP F VP  D ++ ++L+PS+Q  +L
Sbjct: 378 GEFISPIFTVPKKDGKKKSSLIPSQQITFL 407


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,461,128
Number of Sequences: 59808
Number of extensions: 279831
Number of successful extensions: 705
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)