Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30572.Seq
         (508 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking p...    27   0.48 
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           26   0.84 
AJ970251-1|CAI96723.1|  131|Anopheles gambiae putative reverse t...    25   1.9  
EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.            23   7.9  
AF004915-1|AAB94671.1|  688|Anopheles gambiae pro-phenol oxidase...    23   7.9  

>AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking
           protein.
          Length = 932

 Score = 26.6 bits (56), Expect = 0.48
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 179 CREGSRLVHLSTSLMGTSKRGEMTPPCLVCPRDL 280
           CR G  + +    L    ++GE+  PC +C RDL
Sbjct: 342 CRMGKSIANGLAHLHTEIRKGELVKPC-ICHRDL 374


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 25.8 bits (54), Expect = 0.84
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 357 KLNDDFGTGPDEDLTFPSLFS 419
           +L DDF TGPD +   P++FS
Sbjct: 609 ELRDDFPTGPDPNFN-PNIFS 628


>AJ970251-1|CAI96723.1|  131|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 131

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 288 DCCKSLGQTKQGGVISPRFDVPINDVE 208
           +CC+SL  T+Q G   PR  V  N VE
Sbjct: 25  NCCRSLISTRQHGFF-PRRSVTTNLVE 50


>EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.
          Length = 213

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -3

Query: 314 IVEDPRAGKIVVNLSGRL-NKVVSFHLVLMFPSTMLKDGLI 195
           +   PR G      +G   NK+  F LVL+  S + K  L+
Sbjct: 1   MASSPRVGGAAQRPNGATQNKICQFKLVLLGESAVGKSSLV 41


>AF004915-1|AAB94671.1|  688|Anopheles gambiae pro-phenol oxidase
           subunit 1 protein.
          Length = 688

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 228 VPINDVERWTNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 94
           V +ND+ERW + +        VL  SG  +  +E R   + G ++
Sbjct: 304 VSVNDLERWRDRIHEAIDQGFVLDKSGNRIMLDEQRGIDILGDVV 348


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 450,383
Number of Sequences: 2352
Number of extensions: 8908
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 45668772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)