Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30572.Seq
         (508 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal pro...   109   1e-24
Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z81116-4|CAB03304.1|  372|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical pr...    27   5.9  
U40060-5|AAA81143.2|  690|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 22 protein.
          Length = 130

 Score =  109 bits (261), Expect = 1e-24
 Identities = 53/71 (74%), Positives = 59/71 (83%)
 Frame = -3

Query: 467 MVRMAVLRAAFKPVHNAEKRGKSQVLIRPCSKVIVKFFAVMMRHGYIGEFGIVEDPRAGK 288
           MVRM VL  A   ++NAEKRGK QVLIRP SKVIV+F  VMM+HGYIGEF IV+D RAGK
Sbjct: 1   MVRMNVLADALNAINNAEKRGKRQVLIRPASKVIVRFLTVMMKHGYIGEFEIVDDHRAGK 60

Query: 287 IVVNLSGRLNK 255
           IVVNL+GRLNK
Sbjct: 61  IVVNLTGRLNK 71



 Score =  104 bits (249), Expect = 4e-23
 Identities = 47/64 (73%), Positives = 56/64 (87%), Gaps = 1/64 (1%)
 Frame = -2

Query: 270 GQTKQGGVISPRFDVPINDVERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 94
           G+  +  VISPR ++ +ND+E++TN LLPSRQFGYL+LTTS GIMDHEEARRKHLGGKIL
Sbjct: 67  GRLNKASVISPRLNIRLNDLEKYTNTLLPSRQFGYLILTTSAGIMDHEEARRKHLGGKIL 126

Query: 93  GFFF 82
           GFFF
Sbjct: 127 GFFF 130


>Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical
           protein F35G12.8 protein.
          Length = 1549

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 338 HGYIGEFGIVEDPRAGKIVVNLSGRLNKVV 249
           HG +G+ G+++    G I  N   RLN ++
Sbjct: 622 HGRLGDLGVIDPKYEGAICTNFGARLNYLI 651


>Z81116-4|CAB03304.1|  372|Caenorhabditis elegans Hypothetical
           protein T06C12.4 protein.
          Length = 372

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 264 SAREIYNNLASSGILNDSKLTDVT--VPHHHCEKLNDDFGTGPDE 392
           SA+ +  N   + +L+ S+   +    P  H +K+N D  TGPDE
Sbjct: 191 SAKSLTANAVETMLLSYSEFASLLSIFPAEHLQKINYDGDTGPDE 235


>Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical
           protein F17B5.6 protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
 Frame = -1

Query: 184 TTVWL-PSPYNKWW 146
           T +WL P PYN WW
Sbjct: 29  TVIWLIPRPYNYWW 42


>U40060-5|AAA81143.2|  690|Caenorhabditis elegans Hypothetical
           protein F38B6.6 protein.
          Length = 690

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -3

Query: 497 TLRSPS*ILAMVRMAVLRAAFKPVHNAEKRGKSQVLIRPCS 375
           TLR PS  +A + + + +   K  + AEK  K+ +LIRP S
Sbjct: 494 TLR-PSFAVAWMNLGISQMNLKKYYEAEKSLKNSLLIRPNS 533


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,967,677
Number of Sequences: 27780
Number of extensions: 198613
Number of successful extensions: 481
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)