Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30572.Seq
         (508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.4  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   4.2  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   4.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   7.3  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 395 LDFSLAFQHYVQV*RRHAIRPYAPWLRF 478
           ++F LAF   + V  ++ I     WLRF
Sbjct: 54  VNFGLAFVQLINVNEKNQIMKSNVWLRF 81


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 483 ELNLSHGAYGRIACRL 436
           E++L+ G Y R+AC +
Sbjct: 199 EISLTTGNYSRLACEI 214


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 483 ELNLSHGAYGRIACRL 436
           E++L+ G Y R+AC +
Sbjct: 138 EISLTTGNYSRLACEI 153


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 480 LNLSHGAYGRIACRL 436
           ++LS G Y R+AC +
Sbjct: 200 IHLSTGNYSRLACEI 214


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,401
Number of Sequences: 438
Number of extensions: 2112
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)