Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30572.Seq
(508 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy... 102 2e-22
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id... 102 2e-22
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id... 102 2e-22
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy... 100 5e-22
At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC) 97 6e-21
At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE) ri... 66 2e-11
At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB) 64 4e-11
At1g76880.1 68414.m08946 trihelix DNA-binding protein, putative ... 31 0.45
At2g01890.2 68415.m00123 purple acid phosphatase, putative conta... 27 5.5
At2g01890.1 68415.m00122 purple acid phosphatase, putative conta... 27 5.5
At3g59580.1 68416.m06648 RWP-RK domain-containing protein simila... 27 7.3
At1g51570.1 68414.m05804 C2 domain-containing protein contains I... 27 7.3
>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 102 bits (244), Expect = 2e-22
Identities = 48/71 (67%), Positives = 58/71 (81%)
Frame = -3
Query: 467 MVRMAVLRAAFKPVHNAEKRGKSQVLIRPCSKVIVKFFAVMMRHGYIGEFGIVEDPRAGK 288
MVR++VL A K ++NAEKRGK QV+IRP SKVI+KF VM +HGYIGEF V+D R+GK
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 287 IVVNLSGRLNK 255
IVV L+GRLNK
Sbjct: 61 IVVELNGRLNK 71
Score = 101 bits (241), Expect = 4e-22
Identities = 45/64 (70%), Positives = 55/64 (85%), Gaps = 1/64 (1%)
Frame = -2
Query: 270 GQTKQGGVISPRFDVPINDVERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 94
G+ + GVISPRFDV + ++E WT LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+L
Sbjct: 67 GRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVL 126
Query: 93 GFFF 82
GFF+
Sbjct: 127 GFFY 130
>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 102 bits (244), Expect = 2e-22
Identities = 48/71 (67%), Positives = 58/71 (81%)
Frame = -3
Query: 467 MVRMAVLRAAFKPVHNAEKRGKSQVLIRPCSKVIVKFFAVMMRHGYIGEFGIVEDPRAGK 288
MVR++VL A K ++NAEKRGK QV+IRP SKVI+KF VM +HGYIGEF V+D R+GK
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 287 IVVNLSGRLNK 255
IVV L+GRLNK
Sbjct: 61 IVVELNGRLNK 71
Score = 101 bits (241), Expect = 4e-22
Identities = 45/64 (70%), Positives = 55/64 (85%), Gaps = 1/64 (1%)
Frame = -2
Query: 270 GQTKQGGVISPRFDVPINDVERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 94
G+ + GVISPRFDV + ++E WT LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+L
Sbjct: 67 GRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVL 126
Query: 93 GFFF 82
GFF+
Sbjct: 127 GFFY 130
>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 102 bits (244), Expect = 2e-22
Identities = 48/71 (67%), Positives = 58/71 (81%)
Frame = -3
Query: 467 MVRMAVLRAAFKPVHNAEKRGKSQVLIRPCSKVIVKFFAVMMRHGYIGEFGIVEDPRAGK 288
MVR++VL A K ++NAEKRGK QV+IRP SKVI+KF VM +HGYIGEF V+D R+GK
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 287 IVVNLSGRLNK 255
IVV L+GRLNK
Sbjct: 61 IVVELNGRLNK 71
Score = 101 bits (241), Expect = 4e-22
Identities = 45/64 (70%), Positives = 55/64 (85%), Gaps = 1/64 (1%)
Frame = -2
Query: 270 GQTKQGGVISPRFDVPINDVERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 94
G+ + GVISPRFDV + ++E WT LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+L
Sbjct: 67 GRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVL 126
Query: 93 GFFF 82
GFF+
Sbjct: 127 GFFY 130
>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 100 bits (240), Expect = 5e-22
Identities = 47/71 (66%), Positives = 57/71 (80%)
Frame = -3
Query: 467 MVRMAVLRAAFKPVHNAEKRGKSQVLIRPCSKVIVKFFAVMMRHGYIGEFGIVEDPRAGK 288
MVR++VL K ++NAEKRGK QV+IRP SKVI+KF VM +HGYIGEF V+D R+GK
Sbjct: 1 MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 287 IVVNLSGRLNK 255
IVV L+GRLNK
Sbjct: 61 IVVELNGRLNK 71
Score = 99.5 bits (237), Expect = 1e-21
Identities = 44/64 (68%), Positives = 55/64 (85%), Gaps = 1/64 (1%)
Frame = -2
Query: 270 GQTKQGGVISPRFDVPINDVERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 94
G+ + GVISPRFDV + ++E WT LLPSRQFG++VLTTS GIMDHEEARRK++GGK+L
Sbjct: 67 GRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVL 126
Query: 93 GFFF 82
GFF+
Sbjct: 127 GFFY 130
>At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC)
Length = 136
Score = 97.1 bits (231), Expect = 6e-21
Identities = 42/64 (65%), Positives = 54/64 (84%), Gaps = 1/64 (1%)
Frame = -2
Query: 270 GQTKQGGVISPRFDVPINDVERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 94
G+ GVISPR+D+ + ++E WT LLPSRQFGY+VLTTS GIMDHEEAR+K++GGK+L
Sbjct: 73 GRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKNVGGKVL 132
Query: 93 GFFF 82
GFF+
Sbjct: 133 GFFY 136
Score = 93.1 bits (221), Expect = 1e-19
Identities = 44/70 (62%), Positives = 53/70 (75%)
Frame = -3
Query: 467 MVRMAVLRAAFKPVHNAEKRGKSQVLIRPCSKVIVKFFAVMMRHGYIGEFGIVEDPRAGK 288
MVR +VL K + NAEK+GK QV+IRP SKVI+KF VM +HGYI EF V+D R+GK
Sbjct: 7 MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 66
Query: 287 IVVNLSGRLN 258
IVV L+GRLN
Sbjct: 67 IVVELNGRLN 76
>At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE)
ribosomal protein S15a - Brassica napus,PIR2:S20945
Length = 129
Score = 65.7 bits (153), Expect = 2e-11
Identities = 28/64 (43%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Frame = -2
Query: 270 GQTKQGGVISPRFDVPINDVERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 94
G+ ++ R DV ++E++T LP+RQ+GY+V+TT GI+DHEEA ++++GG++L
Sbjct: 66 GRVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVGGQVL 125
Query: 93 GFFF 82
GFF+
Sbjct: 126 GFFY 129
Score = 58.8 bits (136), Expect = 2e-09
Identities = 26/65 (40%), Positives = 40/65 (61%)
Frame = -3
Query: 452 VLRAAFKPVHNAEKRGKSQVLIRPCSKVIVKFFAVMMRHGYIGEFGIVEDPRAGKIVVNL 273
+L A + + NAE+RGK+ V ++P S V+ F +M GYI F + + R G+I V+L
Sbjct: 5 ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDL 64
Query: 272 SGRLN 258
GR+N
Sbjct: 65 QGRVN 69
>At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB)
Length = 129
Score = 64.5 bits (150), Expect = 4e-11
Identities = 28/63 (44%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Frame = -2
Query: 270 GQTKQGGVISPRFDVPINDVERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 94
G+ ++ R DV N++ ++T LP+RQ+GY+V+TT GI+DHEEA ++++GG++L
Sbjct: 66 GRVNDCKALTYRQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNVGGQVL 125
Query: 93 GFF 85
GFF
Sbjct: 126 GFF 128
Score = 59.3 bits (137), Expect = 1e-09
Identities = 27/65 (41%), Positives = 40/65 (61%)
Frame = -3
Query: 452 VLRAAFKPVHNAEKRGKSQVLIRPCSKVIVKFFAVMMRHGYIGEFGIVEDPRAGKIVVNL 273
+L A + + NAEKRGK+ V ++P S V+ F +M GYI F + + R G+I V+L
Sbjct: 5 ILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRITVDL 64
Query: 272 SGRLN 258
GR+N
Sbjct: 65 QGRVN 69
>At1g76880.1 68414.m08946 trihelix DNA-binding protein, putative
similar to DNA-binding protein DF1 [Pisum sativum]
GI:13646986
Length = 603
Score = 31.1 bits (67), Expect = 0.45
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +1
Query: 244 NDTTLFSLPERFTTILPALGSSTIP 318
N++++FS P TT++P L SS+IP
Sbjct: 177 NNSSIFSTPPPVTTVMPTLPSSSIP 201
>At2g01890.2 68415.m00123 purple acid phosphatase, putative contains
Pfam profile: PF00149 calcineurin-like phosphoesterase;
identical to purple acid phosphatase (GI:20257479)
[Arabidopsis thaliana];
Length = 307
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/74 (21%), Positives = 36/74 (48%)
Frame = -3
Query: 329 IGEFGIVEDPRAGKIVVNLSGRLNKVVSFHLVLMFPSTMLKDGLICSPHDSLVT*SLQQV 150
+G++G ++ + + G++ K ++ ++ DG+I SP+DS S +
Sbjct: 50 VGDWGRRGSYNQSQVALQM-GKIGKDLNIDFLISTGDNFYDDGII-SPYDSQFQDSFTNI 107
Query: 149 VASWTMKKPEENTL 108
+ +++KP N L
Sbjct: 108 YTATSLQKPWYNVL 121
>At2g01890.1 68415.m00122 purple acid phosphatase, putative contains
Pfam profile: PF00149 calcineurin-like phosphoesterase;
identical to purple acid phosphatase (GI:20257479)
[Arabidopsis thaliana];
Length = 335
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/74 (21%), Positives = 36/74 (48%)
Frame = -3
Query: 329 IGEFGIVEDPRAGKIVVNLSGRLNKVVSFHLVLMFPSTMLKDGLICSPHDSLVT*SLQQV 150
+G++G ++ + + G++ K ++ ++ DG+I SP+DS S +
Sbjct: 50 VGDWGRRGSYNQSQVALQM-GKIGKDLNIDFLISTGDNFYDDGII-SPYDSQFQDSFTNI 107
Query: 149 VASWTMKKPEENTL 108
+ +++KP N L
Sbjct: 108 YTATSLQKPWYNVL 121
>At3g59580.1 68416.m06648 RWP-RK domain-containing protein similar
to nodule inception protein [Lotus japonicus]
GI:6448579; contains Pfam profile: PF02042 RWP-RK domain
Length = 894
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 263 VCPRDLQQSCQLWDPQRFQTHRCNRASSSLRK 358
VCP L++ C+ R+ + + N+ + SLRK
Sbjct: 558 VCPTTLKRICRQHGIMRWPSRKINKVNRSLRK 589
>At1g51570.1 68414.m05804 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 776
Score = 27.1 bits (57), Expect = 7.3
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = -3
Query: 383 PCSKVIVKFFAVMMRHGYIGEFGIVEDPRAGKIVVNLSG-RLNKVV--SFHLVLMFPSTM 213
PC+ V V F HG G +D R GK+ + LS ++V S+ L+++ PS +
Sbjct: 425 PCTVVTVGVFDNCHLHGGDKNNGGGKDSRIGKVRIRLSTLEADRVYTHSYPLLVLHPSGV 484
Query: 212 LKDGLI 195
K G I
Sbjct: 485 KKMGEI 490
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,591,606
Number of Sequences: 28952
Number of extensions: 196283
Number of successful extensions: 429
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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